Showing posts with label MECHANISM. Show all posts
Showing posts with label MECHANISM. Show all posts

Sunday, 21 December 2014

Hormonal Communication



Hormones are important messages both within the brain and between the brain and the body.

In addition to the nervous system, the endocrine system is a major communication system of the body. While the nervous system uses neurotransmitters as its chemical signals, the endocrine system uses hormones. The pancreas, kidneys, heart, adrenal glands, gonads, thyroid, parathyroid, thymus, and even fat are all sources of hormones. The endocrine system works in large part by acting on neurons in the brain, which controls the pituitary gland. The pituitary gland secretes factors into the blood that act on the endocrine glands to either increase or decrease hormone production. This is referred to as a feedback loop, and it involves communication from the brain to the pituitary to an endocrine gland and back to the brain. This system is very important for the activation and control of basic behavioral activities, such as sex; emotion; responses to stress; and eating, drinking, and the regulation of body functions, including growth, reproduction, energy use, and metabolism. The way the brain responds to hormones indicates that the brain is very malleable and capable of responding to environmental signals.

The brain contains receptors for thyroid hormones (those produced by the thyroid) and the six classes of steroid hormones, which are synthesized from cholesterol — androgens, estrogens, progestins, glucocorticoids, mineralocorticoids, and vitamin D. The receptors are found in selected populations of neurons in the brain and relevant organs in the body. Thyroid and steroid hormones bind to receptor proteins that in turn bind to DNA and regulate the action of genes. This can result in long-lasting changes in cellular structure and function.

The brain has receptors for many hormones; for example, the metabolic hormones insulin, insulin-like growth factor, ghrelin, and leptin. These hormones are taken up from the blood and act to affect neuronal activity and certain aspects of neuronal structure.

In response to stress and changes in our biological clocks, such as day and night cycles and jet lag, hormones enter the blood and travel to the brain and other organs. In the brain, hormones alter the production of gene products that participate in synaptic neurotransmission as well as affect the structure of brain cells. As a result, the circuitry of the brain and its capacity for neurotransmission are changed over a course of hours to days. In this way, the brain adjusts its performance and control of behavior in response to a changing environment.

Hormones are important agents of protection and adaptation, but stress and stress hormones, such as the glucocorticoid cortisol, can also alter brain function, including the brain’s capacity to learn. Severe and prolonged stress can impair the ability of the brain to function normally for a period of time, but the brain is also capable of remarkable recovery.

Reproduction in females is a good example of a regular, cyclic process driven by circulating hormones and involving a feedback loop: The neurons in the hypothalamus produce gonadotropin-releasing hormone (GnRH), a peptide that acts on cells in the pituitary. In both males and females, this causes two hormones — the follicle-stimulating hormone (FSH) and the luteinizing hormone (LH) — to be released into the bloodstream. In females, these hormones act on the ovary to stimulate ovulation and promote release of the ovarian hormones estradiol and progesterone. In males, these hormones are carried to receptors on cells in the testes, where they promote spermatogenesis and release the male hormone testosterone, an androgen, into the bloodstream. Testosterone, estrogen, and progesterone are often referred to as sex hormones.

In turn, the increased levels of testosterone in males and estrogen in females act on the hypothalamus and pituitary to decrease the release of FSH and LH. The increased levels of sex hormones also induce changes in cell structure and chemistry, leading to an increased capacity to engage in sexual behavior. Sex hormones also exert widespread effects on many other functions of the brain, such as attention, motor control, pain, mood, and memory.

Sexual differentiation of the brain is caused by sex hormones acting in fetal and early postnatal life, although recent evidence suggests genes on either the X or Y chromosome may also contribute to this process. Scientists have found statistically and biologically significant differences between the brains of men and women that are similar to sex differences found in experimental animals. These include differences in the size and shape of brain structures in the hypothalamus and the arrangement of neurons in the cortex and hippocampus. Sex differences go well beyond sexual behavior and reproduction and affect many brain regions and functions, ranging from mechanisms for perceiving pain and dealing with stress to strategies for solving cognitive problems. That said, however, the brains of men and women are more similar than they are different.

Anatomical differences have also been reported between the brains of heterosexual and homosexual men. Research suggests that hormones and genes act early in life to shape the brain in terms of sex-related differences in structure and function, but scientists are still putting together all the pieces of this puzzle.

How LASIK Surgery is done


LASIK, or "laser-assisted in situ keratomileusis," is the most commonly performed laser eye surgery to treat myopia (nearsightedness), hyperopia(farsightedness) and astigmatism.

Like other types of refractive surgery, the LASIK procedure reshapes the cornea to enable light entering the eye to be properly focused onto the retina for clearer vision.
In most cases, laser eye surgery is pain-free and completed within 15 minutes for both eyes. The results — improved vision without eyeglasses or contact lenses — can usually be seen in as little as 24 hours.
If you're not a good LASIK candidate, a number of other vision correction surgeries are available, such as PRK and LASEK laser eye surgery and phakic IOL surgery. Your eye doctor will determine if one of these procedures is suitable for your condition and, if so, which technique is best.
Please click here to watch a video about LASIK.
Want a visual? View our LASIK slide show!

How Is LASIK Surgery Performed?

First, your eye surgeon uses either a mechanical surgical tool called a microkeratome or a femtosecond laser to create a thin, circular "flap" in the cornea.
The surgeon then folds back the hinged flap to access the underlying cornea (called the stroma) and removes some corneal tissue using an excimer laser.
This highly specialized laser uses a cool ultraviolet light beam to remove ("ablate") microscopic amounts of tissue from the cornea to reshape it so it more accurately focuses light on the retina for improved vision.
For nearsighted people, the goal is to flatten the cornea; with farsighted people, a steeper cornea is desired.

Excimer lasers also can correct astigmatism by smoothing an irregular cornea into a more normal shape. It is a misconception that LASIK cannot treat astigmatism.

Saturday, 20 December 2014

How Spliceosomes Process RNA


A spliceosome is a large and complex molecular machine found primarily within the splicing speckles of the cell nucleus of eukaryotic cells. The spliceosome is assembled from snRNPs and protein complexes. The spliceosome removes introns from a transcribed pre-mRNA, a kind of primary transcript. This process is generally referred to as splicing. Only eukaryotes have spliceosomes and metazoans have a second spliceosome, the minor spliceosome.

How the Krebs Cycle Works

The citric acid cycle – also known as the tricarboxylic acid cycle (TCA cycle), or the Krebs cycle, – is a series of chemical reactions used by all aerobic organisms to generate energy through the oxidation of acetate derived from carbohydrates, fats and proteins into carbon dioxide and chemical energy in the form of adenosine triphosphate (ATP). In addition, the cycle provides precursors of certain amino acids as well as the reducing agent NADH that is used in numerous other biochemical reactions. Its central importance to many biochemical pathways suggests that it was one of the earliest established components of cellular metabolism and may have originated abiogenically.
The name of this metabolic pathway is derived from citric acid (a type of tricarboxylic acid) that is consumed and then regenerated by this sequence of reactions to complete the cycle. In addition, the cycle consumes acetate (in the form of acetyl-CoA) and water, reduces NAD+ to NADH, and produces carbon dioxide as a waste byproduct. The NADH generated by the TCA cycle is fed into the oxidative phosphorylation (electron transport) pathway. The net result of these two closely linked pathways is the oxidation of nutrients to produce usable chemical energy in the form of ATP.

In eukaryotic cells, the citric acid cycle occurs in the matrix of the mitochondrion. In prokaryotic cells, such as bacteria which lack mitochondria, the TCA reaction sequence is performed in the cytosol with the proton gradient for ATP production being across the cell's surface (plasma membrane) rather than the inner membrane of the mitochondrion.

How the NAD+ Works

How the NAD+ Works
Nicotinamide adenine dinucleotide, abbreviated NAD+, is a coenzyme found in all living cells. The compound is a dinucleotide, since it consists of two nucleotides joined through their phosphate groups: with one nucleotide containing an adenosine ring, and the other containing nicotinamide.
In metabolism, NAD+ is involved in redox reactions, carrying electrons from one reaction to another. The coenzyme is therefore found in two forms in cells: NAD+ is an oxidizing agent – it accepts electrons from other molecules and becomes reduced, this reaction forms NADH, which can then be used as a reducing agent to donate electrons. These electron transfer reactions are the main function of NAD+. However, it is also used in other cellular processes, notably as a substrate of enzymes that add or remove chemical groups from proteins, in posttranslational modifications. Due to the importance of these functions, the enzymes involved in NAD+ metabolism are targets for drug discovery.
In organisms, NAD+ can be synthesized from scratch (de novo) from the amino acids tryptophan or aspartic acid. Alternatively, components of the coenzymes are taken up from food as the vitamin called niacin. Similar compounds are released by reactions that break down the structure of NAD+. These preformed components then pass through a salvage pathway that recycles them back into the active form. Some NAD+ is also converted into nicotinamide adenine dinucleotide phosphate (NADP+); the chemistry of this related coenzyme is similar to that of NAD+, but it has different roles in metabolism.
Nicotinamide adenine dinucleotide is a dinucleotide since it consists of two nucleotides joined by a pair of bridging phosphate groups. The nucleotides consist of ribose rings, one with adenine attached to the first carbon atom (the 1' position) and the other with nicotinamide at this position. The nicotinamide group can be attached in two orientations to this anomeric carbon atom, due to these two possible structures, the compound exists as two diastereomers. It is the β-nicotinamide diastereomer of NAD+ which is found in organisms. These nucleotides are joined together by a bridge of two phosphate groups through the 5' carbons. In metabolism the compound accepts or donates electrons in redox reactions.Such reactions (summarized in formula below) involve the removal of two hydrogen atoms from the reactant (R), in the form of a hydride ion, and a proton (H+). The proton is released into solution, while the reductant RH2 is oxidized and NAD+ reduced to NADH by transfer of the hydride to the nicotinamide ring. RH2 + NAD+ → NADH + H+ + R From the hydride electron pair, one electron is transferred to the positively-charged nitrogen of the nicotinamide ring of NAD+, and the second hydrogen atom transferred to the C4 carbon atom opposite this nitrogen. The midpoint potential of the NAD+/NADH redox pair is −0.32 volts, which makes NADH a strong reducing agent. The reaction is easily reversible, when NADH reduces another molecule and is re-oxidized to NAD+. This means the coenzyme can continuously cycle between the NAD+ and NADH forms without being consumed. In appearance, all forms of this coenzyme are white amorphous powders that are hygroscopic and highly water-soluble. The solids are stable if stored dry and in the dark. Solutions of NAD+ are colorless and stable for about a week at 4 °C and neutral pH, but decompose rapidly in acids or alkalis. Upon decomposition, they form products that are enzyme inhibitors. Both NAD+ and NADH absorb strongly in the ultraviolet due to the adenine base. For example, peak absorption of NAD+ is at a wavelength of 259 nanometers (nm), with an extinction coefficient of 16,900 M-1cm-1. NADH also absorbs at higher wavelengths, with a second peak in UV absorption at 339 nm with an extinction coefficient of 6,220 M-1cm-1. This difference in the ultraviolet absorption spectra between the oxidized and reduced forms of the coenzymes at higher wavelengths makes it simple to measure the conversion of one to another in enzyme assays – by measuring the amount of UV absorption at 340 nm using a spectrophotometer. NAD+ and NADH also differ in their fluorescence. NADH in solution has an emission peak at 460 nm and a fluorescence lifetime of 0.4 nanoseconds, while the oxidized form of the coenzyme does not fluoresce. The properties of the fluorescence signal changes when NADH binds to proteins, so these changes can be used to measure dissociation constants, which are useful in the study of enzyme kinetics. These changes in fluorescence are also used to measure changes in the redox state of living cells, through fluorescence microscopy.

How Translation Works

Friday, 19 December 2014

Hydrochloric Acid Production of the Stomach


Gastric acid is a digestive fluid, formed in the stomach. It is composed of hydrochloric acid (HCl) (around 0.5%, or 5000 parts per million) as high as 0.1 M,[1] potassium chloride (KCl) and sodium chloride (NaCl). The acid plays a key role in digestion of proteins, by activating digestive enzymes, and making ingested proteins unravel so that digestive enzymes break down the long chains of amino acids. Gastric acid is produced by cells lining the stomach, which are coupled in feedback systems to increase acid production when needed. Other cells in the stomach produce bicarbonate, a base, to buffer the fluid, ensuring that it does not become too acidic. These cells also produce mucus, which forms a viscous physical barrier to prevent gastric acid from damaging the stomach. Cells in the beginning of the small intestine, or duodenum, further produce large amounts of bicarbonate to completely neutralize any gastric acid that passes further down into the digestive tract.

Gastric acid is produced by parietal cells (also called oxyntic cells) in the stomach. Its secretion is a complex and relatively energetically expensive process. Parietal cells contain an extensive secretory network (called canaliculi) from which the gastric acid is secreted into the lumen of the stomach. These cells are part of epithelial fundic glands in the gastric mucosa. The pH of gastric acid is 1.5 to 3.5 [2] in the human stomach lumen, the acidity being maintained by the proton pump H+/K+ ATPase. The parietal cell releases bicarbonate into the bloodstream in the process, which causes a temporary rise of pH in the blood, known as alkaline tide.

The resulting highly acidic environment in the stomach lumen causes proteins from food to lose their characteristic folded structure (or denature). This exposes the protein's peptide bonds. The gastric chief cells of the stomach secrete enzymes for protein breakdown (inactive pepsinogen and rennin). Hydrochloric acid activates pepsinogen into the enzyme pepsin, which then helps digestion by breaking the bonds linking amino acids, a process known as proteolysis. In addition, many microorganisms have their growth inhibited by such an acidic environment, which is helpful to prevent infection.

Integration and Excision of a Plasmid



Multicopy plasmids have greatly facilitated gene structure-function studies. However, the use of such plasmids can lead to high-copy-number artifacts, especially in physiological studies. Thus, several methods have been developed for recombining genes on bacterial chromosomes in order to study their functions in single copies. Such methods are frequently used to construct novel Escherichia coli strains that stably express foreign genes for use in both basic research and biotechnology (). However, the development of strains encoding complex metabolic or regulatory pathways poses special problems that often require manipulating many genes and expressing them individually at different levels or under separate regulatory controls. To address these concerns, we have developed a series of plasmid-host systems for the introduction of multiple genes into the same cell in single copies. Our approach is based on genome targeting systems that utilize plasmids carrying a conditional-replication origin and a phage attachment (attP) site (). We refer to our plasmids as CRIM (conditional-replication, integration, and modular) plasmids. CRIM plasmids can be integrated into or retrieved from their bacterial attachment (attB) site by supplying phage integrase (Int) without or with excisionase (Xis) in trans.

Advantages of our CRIM plasmid-host systems include the use of alternative attP andattB sites (for phages λ, HK022, [var phi]80, P21, and P22) and different selectable markers (for chloramphenicol, gentamicin, kanamycin, spectinomycin and streptomycin, tetracycline, and trimethoprim resistance) in conjunction with a polylinker or promoter (ParaBPrhaB,PrhaSPtacPsyn1, and Psyn4) for ectopic expression of the cloned gene(s). These CRIM plasmids have the γ replication origin of R6K, which requires the trans-acting Π protein (encoded by pir) for replication. So, they replicate at a medium (15 per cell) or high (250 per cell) plasmid copy number in pir+ or pir-116 (high-copy-number mutant) E. coli hosts (), respectively. Int helper plasmids are used for integration of CRIM plasmids into the corresponding chromosomal attB sites of normal (non-pir) hosts, which are nonpermissive for CRIM plasmid replication. Xis/Int helper plasmids are used for excision (“curing”) of the respective CRIM plasmids from the chromosome, e.g., to verify that phenotypes are due to their presence. Xis/Int helper plasmids are also used for retrieval (cloning) of CRIM plasmids from the chromosome, e.g., to recover a particular CRIM plasmid after screening of CRIM plasmid or mutant libraries.
Since integration and retrieval involve phage-site-specific recombination events, the original and recovered plasmids are identical. CRIM plasmids can therefore be used for the construction of gene (or mutant) libraries that can be directly integrated into bacterial chromosomes in single copies for screening or selection purposes. Afterwards, CRIM plasmids can be retrieved from individual cells or en masse. The recovered plasmids can then be propagated as plasmids for molecular analysis or integrated directly into the chromosomes of other hosts for subsequent processing without further in vitro manipulation steps. We previously found similar oriRγ attλ plasmids to be extremely useful in mutagenesis studies, especially when it was important that the mutated gene be free of plasmid copy number effects (). We also found them to be useful in studying genes from diverse bacteria, including gram-negative and -positive cells (). Our versatile CRIM plasmid-host systems should be widely useful in gene structure-function studies. Here we describe our basic set of CRIM plasmids, the requisite helper plasmids, and how to use them.

Kidney Function Counter current Mechanism



A countercurrent multiplier system is a mechanism that expends energy to create a concentration gradient.

It is found widely in nature and especially in mammalian organs. For example, it can refer to the process that is underlying the process of urine concentration, that is, the production of hyperosmotic urine by the mammalian kidney. The ability to concentrate urine is also present in birds.[

Countercurrent multiplication is frequently mistaken for countercurrent exchange, a similar but different mechanism where gradients are maintained, but not established.

Physiological principles
The term derives from the form and function of the loop of Henle, which consists of two parallel limbs of renal tubules running in opposite directions, separated by the interstital space of the renal medulla.

The descending limb of the loop of Henle is permeable to water but impermeable to solutes, due to the presence of aquaporin 1 in its tubular wall. Thus water moves across the tubular wall into the medullary space, making the filtrate hypertonic.
The ascending limb is impermeable to water (because of a lack of aquaporin, a common transporter protein for water channels in all cells except the walls of the ascending limb of the loop of Henle) but permeable to solutes, but here Na+, Cl−, and K+ are actively transported into the medullary space, making the filtrate hypotonic (with a higher water potential). This constitutes the single effect of the countercurrent multiplication process.
Active transport of these ions from the thick ascending limb creates an osmotic pressure drawing water from the descending limb into the hyperosmolar medullary space, making the filtrate hypertonic (with a lower water potential).
The countercurrent flow within the descending and ascending limb thus increases, or multiplies the osmotic gradient between tubular fluid and interstitial space.

Details
Countercurrent multiplication was originally studied as a mechanism whereby urine is concentrated in the nephron. Initially studied in the 1950s by Gottschalk and Mylle following Werner Kuhn's postulations,this mechanism gained popularity only after a series of complicated micropuncture experiments.

The proposed mechanism consists of pump, equilibration, and shift steps. In the proximal tubule, the osmolarity is isomolar to plasma (300 mOsm/L). In a hypothetical model where there was no equilibration or pump steps, the tubular fluid and interstitial osmolarity would be 300 mOsm/L as well.{Respicius Rwehumbiza, 2010}

Pump: The Na+/K+/2Cl− transporter in the ascending limb of the loop of Henle helps to create a gradient by shifting Na+ into the medullary interstitium. The thick ascending limb of the loop of Henle is the only part of the nephron lacking in aquaporin—a common transporter protein for water channels. This makes the thick ascending limb impermeable to water. The action of the Na+/K+/2Cl− transporter therefore creates a hypoosmolar solution in the tubular fluid and a hyperosmolar fluid in the interstitium, since water cannot follow the solutes to produce osmotic equilibrium.

Equilibration: Since the descending limb of the loop of henle consists of very leaky epithelium, the fluid inside the descending limb becomes hyperosmolar.

Shift: The movement of fluid through the tubules causes the hyperosmotic fluid to move further down the loop. Repeating many cycles causes fluid to be near isosmolar at the top of Henle's loop and very concentrated at the bottom of the loop. Interestingly, animals with a need for very concentrated urine (such as desert animals) have very long loops of Henle to create a very large osmotic gradient. Animals that have abundant water on the other hand (such as beavers) have very short loops. The vasa recta have a similar loop shape so that the gradient does not dissipate into the plasma.

The mechanism of counter current multiplication works together with the vasa recta's counter current exchange to prevent the wash out of salts and maintain a high osmolarity at the inner medulla

Kidney Function II

The kidneys are bean-shaped organs that serve several essential regulatory roles in vertebrate animals. They remove excess organic molecules (e.g., glucose) from the blood, and it is by this action that their best-known function is performed: the removal of waste products of metabolism (e.g., urea, though 90% of this is reabsorbed along the nephron.) They are essential in the urinary system and also serve homeostatic functions such as the regulation of electrolytes, maintenance of acid–base balance, and regulation of blood pressure (via maintaining salt and water balance). They serve the body as a natural filter of the blood, and remove water soluble wastes, which are diverted to the urinary bladder. In producing urine, the kidneys excrete wastes such as urea and ammonium, and they are also responsible for the reabsorption of water, glucose, and amino acids. The kidneys also produce hormones including calcitriol, erythropoietin, and the enzyme renin, the last of which indirectly acts on the kidney in negative feedback.

Located at the rear of the abdominal cavity in the retroperitoneum, the kidneys receive blood from the paired renal arteries, and drain into the paired renal veins. Each kidney excretes urine into a ureter, itself a paired structure that empties into the urinary bladder.

Renal physiology is the study of kidney function, while nephrology is the medical specialty concerned with kidney diseases. Diseases of the kidney are diverse, but individuals with kidney disease frequently display characteristic clinical features. Common clinical conditions involving the kidney include the nephritic and nephrotic syndromes, renal cysts, acute kidney injury, chronic kidney disease, urinary tract infection, nephrolithiasis, and urinary tract obstruction. Various cancers of the kidney exist; the most common adult renal cancer is renal cell carcinoma. Cancers, cysts, and some other renal conditions can be managed with removal of the kidney, or nephrectomy. When renal function, measured by glomerular filtration rate, is persistently poor, dialysis and kidney transplantation may be treatment options. Although they are not normally harmful, kidney stones can be painful, and repeated, chronic formation of stones can scar the kidneys. The removal of kidney stones involves ultrasound treatment to break up the stones into smaller pieces, which are then passed through the urinary tract. One common symptom of kidney stones is a sharp to disabling pain in the medial/lateral segments of the lower back or groin.

Maturation of the Follicle


In biology, folliculogenesis is the maturation of the ovarian follicle, a densely packed shell of somatic cells that contains an immature oocyte. Folliculogenesis describes the progression of a number of small primordial follicles into large preovulatory follicles that enter the menstrual cycle.
Contrary to male spermatogenesis, which can last indefinitely, folliculogenesis ends when the remaining follicles in the ovaries are incapable of responding to the hormonal cues that previously recruited some follicles to mature. This depletion in follicle supply signals the beginning of menopause.

Mechanism of Steroid Hormone Action


A steroid hormone (abbreviated as sterone) is a steroid that acts as a hormone. Steroid hormones can be grouped into five groups by the receptors to which they bind: glucocorticoids, mineralocorticoids, androgens, estrogens, and progestogens. Vitamin D derivatives are a sixth closely related hormone system with homologous receptors. They have some of the characteristics of true steroids as receptor ligands, but lack the planar fused four ring system of true steroids.

Steroid hormones help control metabolism, inflammation, immune functions, salt and water balance, development of sexual characteristics, and the ability to withstand illness and injury. The term steroid describes both hormones produced by the body and artificially produced medications that duplicate the action for the naturally occurring steroids


Mechanism of Thyroxine




Our understanding of thyroid hormone action has been substantially altered by recent clinical observations of thyroid signaling defects in syndromes of hormone resistance and in a broad range of conditions, including profound mental retardation, obesity, metabolic disorders, and a number of cancers. The mechanism of thyroid hormone action has been informed by these clinical observations as well as by animal models and has influenced the way we view the role of local ligand availability; tissue and cell-specific thyroid hormone transporters, corepressors, and coactivators; thyroid hormone receptor (TR) isoform–specific action; and cross-talk in metabolic regulation and neural development. In some cases, our new understanding has already been translated into therapeutic strategies, especially for treating hyperlipidemia and obesity, and other drugs are in development to treat cardiac disease and cancer and to improve cognitive function.

Introduction

Thyroid hormone regulates a wide range of genes after its activation from the prohormone, thyroxine (T4), to the active form, triiodothyronine (T3) (1). The signaling pathway is complex and highly regulated due to the expression of cell and tissue-specific thyroid hormone transporters, multiple thyroid hormone receptor (TR) isoforms, and interactions with corepressors and coactivators (23). Furthermore, in many cases, thyroid signals are involved in cross-talk with a range of other signaling pathways (45). Here, we review how clinical observations and animal models have shaped our understanding of this pathway, and how this insight might be translated to therapeutic approaches for a range of conditions (Table1).
Table 1
Clinical observation influencing understanding of thyroid hormone action

Overview of thyroid hormone action

Thyroid hormone is produced by the thyroid gland, which consists of follicles in which thyroid hormone is synthesized through iodination of tyrosine residues in the glycoprotein thyroglobulin (67). Thyroid stimulating hormone (TSH), secreted by the anterior pituitary in response to feedback from circulating thyroid hormone, acts directly on the TSH receptor (TSH-R) expressed on the thyroid follicular cell basolateral membrane (8). TSH regulates iodide uptake mediated by the sodium/iodide symporter, followed by a series of steps necessary for normal thyroid hormone synthesis and secretion (9). Thyroid hormone is essential for normal development, growth, neural differentiation, and metabolic regulation in mammals (2310) and is required for amphibian metamorphosis (11). These actions are most apparent in conditions of thyroid hormone deficiency during development, such as maternal iodine deficiency or untreated congenital hypothyroidism, manifesting as profound neurologic deficits and growth retardation (6). More subtle and reversible defects are present when ligand deficiency occurs in the adult (12).
There are two TR genes, TRα and TRβ, with different patterns of expression in development and in adult tissues (213). TRα has one T3-binding splice product, TRα1, predominantly expressed in brain, heart, and skeletal muscle, and two non–T3-binding splice products,TRα2 and TRα3, with several additional truncated forms. TRβ has three major T3-binding splice products: TRβ1 is expressed widely; TRβ2 is expressed primarily in the brain, retina, and inner ear; and TRβ3 is expressed in kidney, liver, and lung (2). Human genetics, animal models, and the use of selective pharmacologic agonists have been informative about the role and specificity of the two major isoforms (2,1415). The selective actions of thyroid hormone receptors are influenced by local ligand availability (116); by transport of thyroid hormone into the cell by monocarboxylate transporter 8 (MCT8) or other related transporters (17); by the relative expression and distribution of the TR isoforms (13) and nuclear receptor corepressors and coactivators (18); and, finally, by the sequence and location of the thyroid hormone response element (TRE; refs. 1920) (Figure 1). In addition, nongenomic actions of thyroid hormone, those actions not involving direct regulation of transcription by TR, have been increasingly recognized (21). Membrane receptors, consisting of specific integrin αv/β3 receptors, have been identified (22) and found to mediate actions at multiple sites, including blood vessels and the heart (23). Several studies have identified direct actions of TR on signal transduction systems (224), which may be especially significant in relation to actions in cell proliferation and cancer.
Nuclear action of thyroid hormone.Figure 1
Nuclear action of thyroid hormone. Shown are the key components required for thyroid hormone action, as demonstrated by a range of clinical observations. (A) The TR gene has 2 major isoforms, TRβ and TRα; the structures ofTRα1 and TRα2 (non–T3-binding) and TRβ1 andTRβ2 are shown. (B) The major thyroid hormone forms, T4, T3, and rT3. (C) Circulating T4 is converted locally in some tissues by membrane-bound D2 to the active form, T3. D3 converts T3 to the inactive rT3. (D) In specific tissues, such as brain, transporters such as MCT8 transport T4 and T3 into the cell. Unliganded TR heterodimerizes with RXR and binds to a TRE and then to a corepressor, such as NCoR or SMRT, repressing gene expression. T3 binding to the ligand-binding domain results in movement of the carboxyterminal helix 12, disruption of corepressor binding, and promotion of coactivator binding, which then leads to recruitment of polymerase III and initiation of gene transcription.
The broad range of genes whose expression is modified by thyroid hormone status makes studying the effect of thyroid hormone action a daunting challenge (25). Many of the actions of thyroid hormone are the result of potentiation or augmentation of other signal transduction pathways (Table 2 and ref. 5). In metabolic regulation, this includes potentiation of adrenergic signaling (2629) as well as direct interaction with metabolic-sensing nuclear receptors (3032). Similar direct receptor-to-receptor interactions and competition for overlapping DNA response elements are seen in neural differentiation, as TR interacts with chicken ovalbumin upstream transcription factor 1 (COUP-TF1) and retinoic acid receptor (RAR) (333).
Table 2
Thyroid signaling cross-talk with other pathways from in vitro and in vivo models and TR isoform preference
TR isoforms differ in length at both amino and carboxy termini and are differentially expressed developmentally and spatially (Figure 1). The structure of TRα and TRβ are similar in the DNA and ligand domains and differ most in the amino terminus, and it is thought that the increased potency of TRα is related to its amino terminus (34). Fundamental differences in the ligand-binding pocket have permitted the design of ligands that specifically interact with TRα or TRβ (35), and these have been important tools in the dissection of isoform-specific actions.
TR isoform selectivity for TRE sequences in genes that mediate thyroid hormone response have been seen in some studies, but not all. TRE sequences influence TR isoform interaction with ligand (36) and may influence coactivator recruitment (37). TR interaction with TREs is not static; as has been reported with other nuclear receptors, there is variation in the pattern of binding that may be influenced by the TRE (37). In vitro studies have shown some TR isoform preferences for specific TREs (38), although the ability to translate these findings to in vivo observations are likely limited. Liver gene profiling in TRα and TRβ gene knockouts demonstrates little in the way of specific genes linked to a TR isoform (25). A recent study, however, suggests that the relative potency of activation may be controlled more by the relative expression of TRα or TRβ in a tissue, rather than by TR isoform specificity for a specific TRE (39).

Cell membrane thyroid hormone transport and local ligand availability

Local activation of T3 from the prohormone T4 at the tissue level is increasingly recognized as an important mechanism of regulation of thyroid hormone action (40). The activity of type 2 5′-deiodinase (D2) is regulated by a ubiquitinase/deubiquitinase mechanism. T4 deiodination by D2 results in exposed lysine residues in D2: ubiquitination of these residues reduces D2 activity, and deubiquitination increases D2 activity (4142). Rodents derive circulating T3 primarily by the action of type 1 5′-deiodinase (D1), but humans rely primarily on D2 (1). The inactivation of T4 to form reverse T3 (rT3), mediated by type 3 5-deiodinase (D3), is also important in regulating tissues levels of T3, especially in thyroid axis regulation and sensory development (4344). Some — but not all — human genetic linkage studies of polymorphisms in D2 have shown an association with obesity and diabetes (4546).
The relationship between the level of serum T4 and serum TSH, termed the set point, is stable for an individual when repeatedly measured prospectively, but varies significantly between individuals (47). This variability in set point in the population suggests that there is a genetic influence involving one or more genes in the thyroid hormone pathway (48). D2 polymorphisms have been associated with an altered pituitary set point of TSH (49) and with a blunted increase in serum T4 after thyrotropin-releasing hormone–stimulated (TRH-stimulated) acute increase in serum TSH (50). Specific D2 polymorphisms were linked to an improved response in hypothyroid patients to replacement with combined therapy of T4 and T3, rather than T4 alone (51). These patients may have reduced conversion of T4 to T3 at the tissue level and benefit from replacement with T3. Selenium is required for the enzyme function of all three deiodinases. Individuals with abnormal thyroid hormone metabolism have been described with defects in theSECISBP2 gene, which is required for the synthesis of selenoproteins (52), thus confirming the essential role of this mineral in thyroid metabolism (Table 1).
Thyroid hormone is hydrophobic and was long thought to enter into the cytoplasm by passive diffusion. Thyroid hormone transporters, such as the monocarboxylate (MCT) family and organic anion transporters (OATPs), were identified based on measurable in vitro activity, but the physiologic significance of these transporters was not established early on (17). MCT8 was identified as a specific transporter of thyroid hormone and was reported to be located on the X chromosome (53). Individuals with a severe form of X-linked mental retardation, Allan-Herndon-Dudley syndrome, manifest with truncal hypotonia, poor head control, and later spasticity and were found to have abnormal thyroid function (elevated serum T4 and rT3 and low T3). When MCT8 was sequenced in these patients, inactivating mutations were identified in some individuals (5455). More recently, a mouse model with MCT8 inactivation demonstrated that MCT8 is also important for secretion of thyroid hormone (56). Oatp1c1 was shown in a mouse model to be important for thyroid transport across the choroid plexus and into the brain (57).
Thyroid transporters in the developing brain are expressed in specific temporal and spatial patterns (1758). Individuals with an MCT8mutation have myelination delays, which are thought to be caused by impaired thyroid hormone action on oligodendrocytes (59). MCT8 is expressed in the hypothalamus, a major site of integration of thyroid hormone feedback and gene regulation (60). Exogenous T3, even in the presence of functional MCT8 transporters, does not act on fetal rat brain, due to the requirement for local production of T3 from T4 (61). Studies of MCT8 have shown that the thyroid hormone metabolite diiodothyropropionic acid (DITPA) does not require MCT8 to enter into cells and is a potential therapy for those affected by MCT8 mutations (62). It is likely, however, that DITPA therapy will require treatment at an early stage of brain development to be effective. Thus, thyroid hormone action in the brain is modulated by both regional activation and selective uptake into cells, identifying multiple selective targets for therapeutic interventions.

Expanded spectrum of resistance to thyroid hormone: TRα and TRβ gene mutations

The major clinical condition associated with impaired nuclear action of thyroid hormone, resistance to thyroid hormone (RTH), was first described in 1967 (63). Clinical features include goiter, elevated circulating thyroid hormone levels, nonsuppressed serum TSH level, clinical euthyroidism, and tachycardia; some individuals also demonstrate attention deficit disorder and deficits of linear growth, hearing, and bone formation (64). The RTH genetic defect was firmly established by a report published more than twenty years ago of a TRβ mutation in an RTH kindred (65).
The potential phenotype of a TRα mutant RTH syndrome was considered based on the phenotype in animal models with TRα deletion or mutation (66). Recently, two families with different inactivating point mutations in TRα that resulted in receptors with dominant-negative properties have been reported (6768). The individual with an E403X TRα mutation had chronic constipation, developmental delay, and short stature, with some improvement after levothyroxine therapy (67). The index patient and her father — who was found to have an insertion of thymine at codon 397 of TRα, resulting in a frameshift and stop codon at 406 — had short stature, delayed bone development, transient delay in motor development, and mildly impaired cognitive development; they also had some improvement with T4 treatment (68). Levels of free T4 and rT3 in these patients were in the low-normal range, and T3 in the high-normal range, with normal TSH. These reports are a long-awaited complement to the well-characterizedTRβ mutations and provide very strong support to the results of genetic and pharmacologic studies indicating that TR isoforms have distinct roles.
It is of particular interest to compare the phenotype of TRα and TRβ mutations in humans and determine the in vivo role of TR isoform specificity. An important difference is that TRβ mediates thyroid hormone feedback to TRH/TSH, and a mutation blunts this feedback, such that more thyroid hormone is produced (8). In a limited study of RTH patients, the reduction in T3 affinity of the TRβ mutant correlated with the slope of the serum TSH to serum T4 (69). The higher concentration of T4 and T3 in individuals with a TRβ mutation may compensate for the impaired receptor signaling. In patients with TRα mutations, thyroid hormone feedback is not impaired to the same extent, so thyroid hormone levels are not elevated. This may result in peripheral hypothyroidism, and also points to a potential benefit of levothyroxine therapy in these individuals.
Recently, a report of several patients that are homozygous for TRβ mutations demonstrated phenotypic features that represented a combination of those found in individuals heterozygous for a mutation only in TRα or in TRβ (70). Patients homozygous for TRβ mutations have a more severe phenotype of RTH — goiter, hearing loss, and much greater elevations of serum T3, T3, and TSH — than heterozygous individuals. Those homozygous for a TRβ mutation also have intellectual deficits and growth retardation, more characteristic of deficient action of TRα (6768). This shows that the mutant TRβ, expressed at sufficiently high levels, antagonizes the actions of TRα.

Role of TR interaction with cofactors

The essential function of gene repression by transcription factor corepressors in development and homeostasis is being increasingly recognized (7172). Initial in vitro transfection studies with TR expression vectors showed that the unliganded receptor had a repressive effect on genes positively regulated by T3 and an activating effect on genes normally repressed by T3 (73). The significance of this property has subsequently been demonstrated by several in vivo models. The mouse model with complete absence of TRα and TRβ has a milder phenotype than a hypothyroid mouse (74). In the setting ofTRα gene deletion, the structural effects of induced neonatal hypothyroidism on the mouse brain were not seen (75). The repressive actions of the unliganded receptor, therefore, have a greater physiologic effect than having no receptor at all (18). The interaction of TR with corepressors has been carefully mapped and tested (7677). Astapova et al. recently described a mouse model that expressed a version of nuclear receptor corepressor (NCoR) with a mutation in the region that binds TR (78). The disruption of this interaction resulted in a blunted TSH response to thyroid hormone, but enhanced peripheral tissue sensitivity, as the animals were euthyroid despite lower circulating thyroid hormone levels. Interestingly, a mutant NCoR ubiquitously expressed in the background of a TRβ RTH mutant reversed much of the resistance phenotype seen in that model (79). This indicates that constitutive TR interaction with a corepressor is an important mechanism for RTH.
In a similar approach, mutation of the coactivator interacting domain in TRβ resulted in resistance to the action of thyroid hormone (80). The interaction of NCoR with histone deacetylase 3 seems to be important for both T3-induced gene activation and repression (81). Another approach to determine the importance of TR coactivator interactions is to determine the impact of coactivator knockouts on thyroid hormone action (8283). Mice deficient in the coactivator SRC1 showed increased resistance to the action of thyroid hormone (84). These models may provide a mechanistic basis for the approximately 15% of individuals with an RTH phenotype who lack mutations in TRβ, although no cofactor gene mutations have yet been identified in these patients (85).

TR isoforms and neural development

Highly selective TR isoform requirements have been shown most clearly in models of sensory development, with marked and selective defects of structure and function in the setting of TR isoform inactivation (86). These include development of the inner ear and the cone photoreceptors in the retina (8788). Another site with specific TR isoform function is bone, both developmentally and in the adult (89). The developmental importance of TR isoforms is coupled with a requirement for specific transporter expression, such as MCT8 expression in the mouse cochlea (58), as well as a requirement for D2 expression to provide local T3, and for D3 to inactivate thyroid hormone and protect from excessive T3 action during sensitive periods (8690).
Thyroid hormone interfaces with other signaling pathways in neural development (Table 2). There is a close developmental link between retinoic acid action in early neurologic development and thyroid hormone action (3). In most model systems studied, retinoic acid acts first, followed by thyroid hormone action. Several studies have shown thyroid hormone targets in early neurological development and a requirement for TRα expression (9192). There are multiple genes whose expression is known to be regulated by both TR and RAR at the TRE (9395). TR and RAR interact in promoting neural differentiation (9697), including a repressive action of the unliganded RAR, as has been shown for unliganded TR (7398).
The orphan nuclear receptor COUP-TF1 is expressed early in neurological development, when thyroid hormone is present, but before the brain is responsive to it (33). Thyroid hormone responsiveness of the brain is associated with reduced expression of COUP-TF1. Numerous thyroid hormone gene targets have been identified with overlapping TR and COUP-TF1 response elements (99,100). The expression of COUP-TF1 blocks TR from binding the TRE, consistent with protection from early T3 stimulation. Calcium calmodulin–dependent kinase IV (CamKIV), a major thyroid hormone target gene in the developing brain, contains a TRE and COUP-TF1 binding site (101). CamKIV is regulated directly by T3 in primary cultured neurons from fetal cortex and promotes the maturation and proliferation of GABAergic interneurons from their precursor cells (102). The timing of the transport of thyroid hormone is tied to RA based on the stimulation of MCT8 gene expression. Using a neuronal cell model, RA was shown to stimulate MCT8 mRNA expression and to confer thyroid hormone transport (103).
TRα protein is expressed in embryonic postmitotic neurons and most adult neurons in the mouse brain, which suggests that thyroid hormone may also have a significant role in the adult brain (104). Thyroid hormone acting through TRα regulates adult hippocampal neurogenesis, which is important in learning, memory, and mood (105,106). Expression of a mutant TRα is associated with more depressive behavior traits in mice (107).

TR isoforms and metabolic regulation

Specific actions of TR isoforms have been demonstrated for metabolic regulation, including in white fat and brown adipose tissue (BAT). TRα potentiates adrenergic action in white fat, and when TRα is mutated, visceral fat accumulates (30). BAT expresses both TRα and TRβ, which have selective roles in adaptive thermogenesis (2829). Adaptive thermogenesis requires adrenergic stimulation, T3, D2, uncoupling protein 1 (UCP1), and both TRα and TRβ (27). The TRα isoform is required for adrenergic signaling (30), and the TRβ isoform is required for stimulation of UCP1 (29). In addition to these examples of thyroid hormone potentiation of peripheral adrenergic signaling, thyroid also influences adrenergic signaling centrally (108).
RTH patients with dominant-negative TRβ mutations have some growth retardation and skeletal defects, but do not consistently present with metabolic abnormalities. However, in a recent study of RTH patients, increased resting energy expenditure was reported (109). These findings suggest that TRα actions mediating adrenergic sensitivity and fatty acid oxidation may be activated by the higher thyroid hormone levels in RTH patients, as is seen in the heart (5).
TRs engage in cross-talk with a range of nuclear metabolic receptors, including PPARα (26), PPARγ (110), and liver X receptor (LXR), in metabolic regulation (111112) and in brain cortical layering (Table 2and ref. 113). The role of thyroid hormone receptor as an endocrine modulator of metabolic regulation, interacting with other nuclear receptors, PPARγ coactivator 1 (PGC-1), and p160 coactivators and corepressors, has been well described (114).
Our understanding of metabolic cross-talk has been applied directly to therapy with the use of TRβ agonists for lipid lowering and weight loss (15115). TRβ agonists have approximately 10-fold greater affinity for TRβ than TRα. Initial studies with TRβ agonists showed a marked preference for action in the liver, efficacy in lowering of cholesterol, and, for some compounds, weight loss, all with little effect on heart or bone. A phase 2 trial of the TRβ agonist eprotirome in patients who had not reached LDL target level with a statin demonstrated that the addition of eprotirome produced a dramatic improvement in LDL (116), although cartilage damage in longer-term dog models has led to the withdrawal of these compounds from clinical trials. Although these actions speak strongly for TR isoform specificity, a significant part of the specificity of action of these agents is much greater concentration of the selective agonist compound in the liver compared with the heart (117). A recent study found that the changes in gene expression in the liver were the same after T3 stimulation or exposure to the selective TRβ agonist GC1 (118). MB07811 achieves liver specificity by being activated after entering hepatocytes by the action of cytochrome P450 to generate the TRβ agonist MB07344 (119). Interestingly, providing hypothyroid human subjects with only T3 rather than T4, but keeping their TSH in the normal reference range, also results in reduced LDL cholesterol and slight weight loss (120). This modest local hepatic excess of T3 may be sufficient to lower cholesterol and produce weight loss, even when systemic levels are in the normal range.
The thyroid hormone analog DIPTA was found to have some specificity for action on the heart and was studied in a prospective randomized control study in patients with severe heart failure (121). Although improvement in some cardiac parameters was seen, the metabolic effects of weight loss were profound, and the study stopped. The metabolic effects of DITPA — reduction in body weight and LDL cholesterol — provide encouragement for beneficial effects of this class of compound, although stimulation of bone turnover and bone loss by DITPA will limit its therapeutic use (122).
The clinical utility of a TR antagonist has been considered primarily to antagonize the cardiac effects of thyroid hormone, such as ischemia and arrhythmias (123). The structure of the apo TR, without ligand, has not been solved, but important features have been identified from studies of the liganded receptor with agonists and antagonists (35,123). Helix 12 is the carboxyterminal helix of TR, which folds in response to ligand and is essential for TR interaction with coactivators and corepressors (124). TR antagonists have been designed by adding extension groups on TR agonists that interfere with Helix 12 folding (123), although this approach is not specific for TRα or TRβ.

Association of thyroid hormone receptor mutations with cancer

The viral oncogenes v-erbA and v-erbB are the mediators of avian erythroblastosis retrovirus (AEV) induction of erythroleukemias and fibrosarcomas in chickens, first recognized in 1935 (125127). v-erbA was later recognized as a mutant version of TRα, with features that favor oncogenic activity, including deletion of the Helix 12 TR domain, which prevents T3 binding.
The link between the origins of TR and oncogenes is consistent with the role of thyroid hormone signaling and mutant TRs in several forms of cancer. The PV model, in which animals harbor a specific truncation ofTRβ, is associated with the development of thyroid cancer (128). In related studies, TRβ mutations have been identified in a range of cancers, including hepatocellular carcinoma, renal cell carcinoma, erythroleukemias, and thyroid cancer (127129). TSH-secreting pituitary tumors have also been linked to TRβ mutations. TRβ mutants are associated with direct interaction with the regulatory p85α subunit of PI3K, which leads to activation of PI3K and increased phosphorylation of Akt and mTOR and results in cellular proliferation and migration (24130). Mutations in TRβ promote metastatic spread of thyroid cancer (131). TRβ mutants have also been linked to pituitary tumors by activation of the cyclin D1/cyclin-dependent kinase/retinoblastoma/E2F pathway (132). TRα directly stimulates transcription of the β-catenin gene in intestinal epithelial cells and may play a role in tumorigenesis in that tissue (133). Expression of D3, which inactivates thyroid hormone, has been associated with proliferation of malignant keratinocytes in basal cell skin carcinomas (134).

Summary


The elements required for thyroid hormone action are well recognized, but the interaction among the various pathways has been challenging to understand. Thyroid hormone interacts with a wide variety of signaling pathways, and its action is modulated based on nutritional and iodine status. A range of conditions with disordered thyroid signaling has allowed us to identify key regulatory pathways that are potential therapeutic targets. The availability of TR isoform–selective agonists and the recent reports of patients with RTH due to TRα mutations, as well as those homozygous for TRβ mutations, are strong evidence for TR isoform specificity. The role of the pituitary in responding to a defect in a thyroid hormone action pathway is central to the resulting phenotype. These pathways, as well as the role of thyroid hormone in metabolism, cardiac function, and oncogenesis, are likely to be the focus in applying these findings.

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