Showing posts with label medical microbiology. Show all posts
Showing posts with label medical microbiology. Show all posts

Saturday, 27 December 2014

Medical Microbiology: The Big Picture


Medical Microbiology: The Big Picture 


Medical Microbiology The Big Picture By Neal Chamberlain

Medical Microbiology: The Big Picture By Neal Chamberlain
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Book Description
Get the Big Picture of Medical Microbiology-and zero-in on what your really need to know to ace the course and board exams and prepare for clinical rotations!
A Doody’s Core Title!
4 STAR DOODY’S REVIEW!
“This is in a league of its own, encompassing aspects of a textbook, an atlas, and a high yield quick- eference….For medical students and residents looking for a book that emphasizes the clinical presentation and treatment of human pathogens, this is highly recommended. Overall, this is a beautifully bound workbook-style text, with high-gloss pages and well oriented color pictures, tables, and diagrams. This is the book that will help new medical practitioners to see the forest for the trees of infectious disease.” — Doody’s Review Service
Medical Microbiology: The Big Picture is a different kind of resource. With an emphasis on what you “need to know” versus “what’s nice to know,” and featuring 300 full-color illustrations, it offers a focused, streamlined overview of clinical microbiology and immunology. You’ll find a succinct, user-friendly presentation designed to make even the most complex concepts understandable in a short amount of time.
With just the right balance of information to give you the edge at exam time, Medical Microbiology: The Big Picture features:
  • A “Big Picture” perspective on precisely what you need to know
  • Clinically oriented coverage of infections of the central nervous system, eyes and ears, respiratory tract, gastrointestinal tract, hematopoietic/lymphoreticular system, bone and joints, and more
  • 300 labeled and fully-explained full-color illustrations
  • Numerous summary tables and figures
  • Key concepts at the end of each chapter
  • 100 USMLE-type questions, answers, and explanations to help you prepare for the exams

Medical Microbiology: The Big Picture By Neal Chamberlain

Tuesday, 23 December 2014

Topley and Wilson’s Microbiology and Microbial Infections, 8 Volume Set, 10th Edition


Topley and Wilson’s Microbiology and Microbial Infections, 8 Volume Set, 10th Edition


Topley and Wilson’s Microbiology and Microbial Infections, 8 Volume Set, 10th Edition

Topley and Wilson's Microbiology and Microbial Infections, 8 Volume Set, 10th Edition
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Topley and Wilson’s Microbiology and Microbial Infections, 8 Volume Set, 10th Edition

Book Description
Since its first publication in 1929, Topley & Wilson’s Microbiology & Microbial Infections has grown from one to eight volumes, a reflection of the ever-increasing breadth and depth of knowledge in each of the areas covered. The tenth edition continues the tradition of providing the most comprehensive available reference on microorganisms and related infectious diseases. The new edition of Topley & Wilson’s Microbiology & Microbial Infections is an essential addition to the bookshelves of medical microbiologists, immunologists, infectious disease specialists and public health professionals, as well as being a standard reference for specialists within the pharmaceutical industry, trainees across the medical sub-specialities, and laboratory technicians.
The 10th edition features:
  • the latest information on epidemiology, identification, classification, and new and emerging infections, all supported by the basic science that underlies infectious disease
  • each volume includes the best writing in the fields of Bacteriology, Virology, Medical Mycology, Parasitology, and Immunology  
  • a new Immunology volume – both a complement to the other titles, and an excellent reference work for every immunologist
  • fully integrated colour for the first time – the text is supported by over 1,400 photographs and 700 line drawings
  • an international, acclaimed editorial team and a highly respected group of over 400 contributors, drawing on best practice from over 20 countries
  • a comprehensive cumulative index
The 10th edition of Topley & Wilson’s Microbiology & Microbial Infections is an essential addition to the bookshelves of medical microbiologists, immunologists, infectious disease specialists, pathologists, travel and tropical medicine specialists, and public health scientists; and will also be a standard reference for all those working in the pharmaceutical industry, trainees across the medical subspecialties, and laboratory technicians. The breadth of information available in the tenth edition is astonishing, and will support academic and clinical practice for many years to come.

Topley and Wilson’s Microbiology and Microbial Infections, 8 Volume Set, 10th Edition

Saturday, 6 December 2014

Vibrio cholerae and Asiatic Cholera

Vibrio cholerae and Asiatic Cholera (page 1) 

(This chapter has 4 pages) 



Introduction
The genus Vibrio consists of Gram-negative straight or curved rods, motile by means of a single polar flagellum. Vibrios are capable of both respiratory and fermentative metabolism. O2 is a universal electron acceptor; they do not denitrify. Most species are oxidase-positive. In most ways vibrios are related to enteric bacteria, but they share some properties with pseudomonads a well. The Family Vibrionaceae is found in the "Facultatively Anaerobic Gram-negative Rods" in Bergey's Manual (1986), on the level with the FamilyEnterobacteriaceae. In the revisionist taxonomy of 2001 (Bergey's Manual), based on phylogenetic analysis, VibrionaceaePseudomonadaceae andEnterobacteriaceae are all landed in the  Gammaproteobacteria. Vibrios are distinguished from enterics by being oxidase-positive and motile by means of polar flagella. Vibrios are distinguished from pseudomonads by being fermentative as well as oxidative in their metabolism. Of the vibrios that are clinically significant to humans, Vibrio cholerae,the agent of cholera, is the most important.
Most vibrios have relatively simple growth factor requirements and will grow in synthetic media with glucose as a sole source of carbon and energy. However, since vibrios are typically marine organisms, most species require 2-3% NaCl or a sea water base for optimal growth. Vibrios vary in their nutritional versatility, but some species will grow on more than 150 different organic compounds as carbon and energy sources, occupying the same level of metabolic versatility asPseudomonas. In liquid media vibrios are motile by polar flagella that are enclosed in a sheath continuous with the outer membrane of the cell wall. On solid media they may synthesize numerous lateral flagella which are not sheathed.
Vibrios are one of the most common organisms in surface waters of the world. They occur in both marine and freshwater habitats and in associations with aquatic animals. Some species are bioluminescent and live in mutualistic associations with fish and other marine life. Other species are pathogenic for fish, eels, and frogs, as well as other vertebrates and invertebrates.
V. cholerae and V. parahaemolyticus are pathogens of humans. Both produce diarrhea, but in ways that are entirely different. V. parahaemolyticus is an invasive organism affecting primarily the colon; V. cholerae is noninvasive, affecting the small intestine through secretion of an enterotoxin. Vibrio vulnificusis an emerging pathogen of humans. This organism causes wound infections, gastroenteritis, or a syndrome known as "primary septicemia."
Campylobacter jejuni (formerly Vibrio fetus), is now moved to the classEpsilonproteobacteria in the the family CampylobacteraceaeCampylobacter jejuni has been associated with dysentery-like gastroenteritis, as well as with other types of infection, including bacteremic and central nervous system infections in humans. Another vibrio-like organism, Helicobacter pylori causes duodenal and gastric ulcers and gastric cancer. It is also reclassified into the class Epsilonproteobacteria family Helicobacteraceae.


Vibrio cholerae

Cholera

Cholera (frequently called Asiatic cholera or epidemic cholera) is a severe diarrheal disease caused by the bacterium Vibrio cholerae. Transmission to humans is by water or food. The natural reservoir of the organism is not known. It was long assumed to be humans, but some evidence suggests that it is the aquatic environment.
V. cholerae produces cholera toxin, the model for enterotoxins, whose action on the mucosal epithelium is responsible for the characteristic diarrhea of the disease cholera. In its extreme manifestation, cholera is one of the most rapidly fatal illnesses known. A healthy person may become hypotensive within an hour of the onset of symptoms and may die within 2-3 hours if no treatment is provided. More commonly, the disease progresses from the first liquid stool to shock in 4-12 hours, with death following in 18 hours to several days.
The clinical description of cholera begins with sudden onset of massive diarrhea. The patient may lose gallons of protein-free fluid and associated electrolytes, bicarbonates and ions within a day or two. This results from the activity of the cholera enterotoxin which activates the adenylate cyclase enzyme in the intestinal cells, converting them into pumps which extract water and electrolytes from blood and tissues and pump it into the lumen of the intestine. This loss of fluid leads to dehydration, anuria, acidosis and shock. The watery diarrhea is speckled with flakes of mucus and epithelial cells ("rice-water stool") and contains enormous numbers of vibrios. The loss of potassium ions may result in cardiac complications and circulatory failure. Untreated cholera frequently results in high (50-60%) mortality rates.
Treatment of cholera involves the rapid intravenous replacement of the lost fluid and ions. Following this replacement, administration of isotonic maintenance solution should continue until the diarrhea ceases. If glucose is added to the maintenance solution it may be administered orally, thereby eliminating the need for sterility and iv. administration. By this simple treatment regimen, patients on the brink of death seem to be miraculously cured and the mortality rate of cholera can be reduced more than ten-fold. Most antibiotics and chemotherapeutic agents have no value in cholera therapy, although a few (e.g. tetracyclines) may shorten the duration of diarrhea and reduce fluid loss.

Cholera has smoldered in an endemic fashion on the Indian subcontinent for centuries. There are references to deaths due to dehydrating diarrhea dating back to Hippocrates and Sanskrit writings. Epidemic cholera was described in 1563 by Garcia del Huerto, a Portuguese physician at Goa, India. The mode of transmission of cholera by water was proven in 1849 by John Snow, a London physician. In 1883, Robert Koch successfully isolated the cholera vibrio from the intestinal discharges of cholera patients and proved conclusively that it was the agent of the disease.
The first long-distance spread of cholera to Europe and the Americas began in 1817, such that by the early 20th century, six waves of cholera had spread across the world in devastating epidemic fashion. Since then, until the 1960s, the disease contracted, remaining present only in southern Asia. In 1961, the "El Tor" biotype (distinguished from classic biotypes by the production of hemolysins) reemerged and produced a major epidemic in the Philippines to initiate a seventh global pandemic (See map below). Since then, this biotype has spread across Asia, the Middle East, Africa, and parts of Europe.
There are several characteristics of the El Tor strain that confer upon it a high degree of "epidemic virulence" allowing it to spread across the world as previous strains have done. First, the ratio of cases to carriers is much less than in cholera due to classic biotypes (1: 30-100 for El Tor vs. 1: 2 - 4 for "classic" biotypes). Second, the duration of carriage after infection is longer for the El Tor strain than the classic strains. Third, the El Tor strain survives for longer periods in the extraintestinal environment. Between 1969 and 1974, El Tor replaced the classic strains in the heartland of endemic cholera, the Ganges River Delta of India.

The global spread of cholera during the seventh pandemic, 1961-1971. (CDC)
El Tor broke out explosively in Peru in 1991 (after an absence of cholera there for 100 years), and spread rapidly in Central and South America, with recurrent epidemics in 1992 and 1993. From the onset of the epidemic in January 1991 through September 1, 1994, a total of 1,041,422 cases and 9,642 deaths (overall case-fatality rate: 0.9%) were reported from countries in the Western Hemisphere to the Pan American Health Organization. In 1993, the numbers of reported cases and deaths were 204,543 and 2362, respectively.
In 1982, in Bangladesh, a classic biotype resurfaced with a new capacity to produce more severe illness, and it rapidly replaced the El Tor strain which was thought to be well-entrenched. This classic strain has not yet produced a major outbreak in any other country.
In December, 1992, a large epidemic of cholera began in Bangladesh, and large numbers of people have been involved. The organism has been characterized asV. cholerae O139 "Bengal". It is derived genetically from the El Tor pandemic strain but it has changed its antigenic structure such that there is no existing immunity and all ages, even in endemic areas, are susceptible. The epidemic has continued to spread. and V. choleraeO139 has affected at least 11 countries in southern Asia. Specific totals for numbers of V. cholerae O139 cases are unknown because affected countries do not report infections caused by O1 and O139 separately.
In April 1997, a cholera outbreak occurred among 90,000 Rwandan refugees residing in temporary camps in the Democratic Republic of Congo. During the first 22 days of the outbreak, 1521 deaths were recorded, most of which occurred outside of health-care facilities.
In the United States, cholera was prevalent in the 1800s but has been virtually eliminated by modern sewage and water treatment systems. However, as a result of improved transportation, more persons from the United States travel to parts of Latin America, Africa, or Asia where epidemic cholera is occurring. U.S. travelers to areas with epidemic cholera may be exposed to the bacterium. In addition, travelers may bring contaminated seafood back to the United States. A few foodborne outbreaks have been caused by contaminated seafood brought into this country by travelers. Greater than 90 percent of the cases of cholera in the U.S. have been associated with foreign travel.
V. choleraemay also live in the environment in brackish rivers and coastal waters. Shellfish eaten raw have been a source of cholera, and a few persons in the United States have contracted cholera after eating raw or undercooked shellfish from the Gulf of Mexico.
Antigenic Variation and LPS Structure in Vibrio cholerae

Antigenic variation plays an important role in the epidemiology and virulence of cholera. The emergence of the Bengal strain, mentioned above, is an example. The flagellar antigens of V. cholerae are shared with many water vibrios and therefore are of no use in distinguishing strains causing epidemic cholera. O antigens, however, do distinguish strains of V. cholerae into 139 known serotypes. Almost all of these strains of V. cholerae are nonvirulent. Until the emergence of the Bengal strain (which is "non-O1") a single serotype, designated O1, has been responsible for epidemic cholera. However, there are three distinct O1 biotypes, named Ogawa, Inaba and Hikojima, and each biotype may display the "classical" or El Tor phenotype. The Bengal strain (O139) is a new serological strain with a unique O-antigen which partly explains the lack of residual immunity.
Antigenic Determinants of Vibrio cholerae
SerotypeO Antigens
OgawaA, B
InabaA, C
HikojimaA, B, C
Endotoxin is present in Vibrio cholerae as in other Gram-negative bacteria. Fewer details of the chemical structure of Vibrio cholerae LPS are known than in the case of E. coli and Salmonella, but some unique properties have been described. Most importantly, variations in LPS occur in vivo and in vitro, which may be correlated with reversion in nature of nonepidemic strains to classic epidemic strains and vice versa.

Cholera Toxin

Cholera toxin activates the adenylate cyclase enzyme in cells of the intestinal mucosa leading to increased levels of intracellular cAMP, and the secretion of H20, Na+, K+, Cl-, and HCO3- into the lumen of the small intestine. The effect is dependent on a specific receptor, monosialosyl ganglioside (GM1 ganglioside) present on the surface of intestinal mucosal cells. The bacterium produces an invasin, neuraminidase, during the colonization stage which has the interesting property of degrading gangliosides to the monosialosyl form, which is the specific receptor for the toxin.
The toxin has been characterized and contains 5 binding (B) subunits of 11,500 daltons, an active (A1) subunit of 23,500 daltons, and a bridging piece (A2) of 5,500 daltons that links A1 to the 5B subunits. Once it has entered the cell, the A1 subunit enzymatically transfers ADP ribose from NAD to a protein (called Gs or Ns), that regulates the adenylate cyclase system which is located on the inside of the plasma membrane of mammalian cells.
Enzymatically, fragment A1 catalyzes the transfer of the ADP-ribosyl moiety of NAD to a component of the adenylate cyclase system. The process is complex. Adenylate cyclase (AC) is activated normally by a regulatory protein (GS) and GTP; however activation is normally brief because another regulatory protein (Gi), hydrolyzes GTP. The normal situation is described as follows.
The A1 fragment catalyzes the attachment of ADP-Ribose (ADPR) to the regulatory protein forming Gs-ADPR from which GTP cannot be hydrolyzed. Since GTP hydrolysis is the event that inactivates the adenylate cyclase, the enzyme remains continually activated. This situation can be illustrated
Thus, the net effect of the toxin is to cause cAMP to be produced at an abnormally high rate which stimulates mucosal cells to pump large amounts of Cl- into the intestinal contents. H2O, Na+ and other electrolytes follow due to the osmotic and electrical gradients caused by the loss of Cl-. The lost H2O and electrolytes in mucosal cells are replaced from the blood. Thus, the toxin-damaged cells become pumps for water and electrolytes causing the diarrhea, loss of electrolytes, and dehydration that are characteristic of cholera. 

.
Mechanism of action of cholera enterotoxin according to Finkelstein inBaron, Chapter 24. Cholera toxin approaches target cell surface. B subunits bind to oligosaccharide of GM1 ganglioside. Conformational alteration of holotoxin occurs, allowing the presentation of the A subunit to cell surface. The A subunit enters the cell. The disulfide bond of the A subunit is reduced by intracellular glutathione, freeing A1 and A2. NAD is hydrolyzed by A1, yielding ADP-ribose and nicotinamide. One of the G proteins of adenylate cyclase is ADP-ribosylated, inhibiting the action of GTPase and locking adenylate cyclase in the "on" mode.

Colonization of the Small Intestine

There are several characteristics of pathogenic V. cholerae that are importantdeterminants of the colonization process. These include adhesins,neuraminidasemotility, chemotaxis and toxin production. If the bacteria are able to survive the gastric secretions and low pH of the stomach, they are well adapted to survival in the small intestine. V. cholerae is resistant to bile salts and can penetrate the mucus layer of the small intestine, possibly aided by secretion of neuraminidase and proteases (mucinases). They withstand propulsive gut motility by their own swimming ability and chemotaxis directed against the gut mucosa.
Specific adherence of V. cholerae to the intestinal mucosa is probably mediated by long filamentous fimbriae that form bundles at the poles of the cells. These fimbriae have been termed Tcp pili (for toxin coregulated pili), because expression of these pili genes is coregulated with expression of the cholera toxin genes. Not much is known about the interaction of Tcp pili with host cells, and the host cell receptor for these fimbriae has not been identified. Tcp pili share amino acid sequence similarity with N-methylphenylalanine pili of Pseudomonasand Neisseria.
Two other possible adhesins in V. cholerae are a surface protein that agglutinates red blood cells (hemagglutinin) and a group of outer membrane proteins which are products of the acf (accessory colonization factor) genes. acf mutants have been shown to have reduced ability to colonize the intestinal tract. It has been suggested that V. cholerae might use these nonfimbrial adhesins to mediate a tighter binding to host cells than is attainable with fimbriae alone.
V. cholerae produces a protease originally called mucinase that degrades different types of protein including fibronectin, lactoferrin and cholera toxin itself. Its role in virulence is not known but it probably is not involved in colonization since mutations in the mucinase gene (designated hap for hemagglutinin protease) do not exhibit reduced virulence. It has been suggested that the mucinase might contribute to detachment rather than attachment. Possibly the vibrios would need to detach from cells that are being sloughed off of the mucosa in order to reattach to newly formed mucosal cells.
Genetic Organization and Regulation of Virulence Factors in Vibrio cholerae

In Vibrio cholerae, the production of virulence factors is regulated at several levels. Regulation of genes at the transcriptional level, especially the genes for toxin production and fimbrial synthesis, has been studied in the greatest detail.
V. cholerae enterotoxin is a product of ctx genes. ctxA encodes the A subunit of the toxin, and ctxB encodes the B subunit. The genes are part of the same operon. The transcript (mRNA) of the ctx operon has two ribosome binding sites (rbs), one upstream of the A coding region and another upstream of the B coding region. The rbs upstream of the B coding region is at least seven-times stronger than the rbs of the A coding region. In this way the organism is able to translate more B proteins than A proteins, which is required to assemble the toxin in the appropriate 1A: 5B proportion. The components are assembled in the periplasm after translation. Any extra B subunits can be excreted by the cell, but A must be attached to 5B in order to exit the cell. Intact A subunit is not enzymatically active, but must be nicked to produce fragments A1 and A2 which are linked by a disulfide bond. Once the cholera toxin has bound to the GM1 receptor on host cells, the A1 subunit is released from the toxin by reduction of the disulfide bond that links it to A2, and enters the cell by an unknown translocation mechanism. One hypothesis is that the 5 B subunits form a pore in the host cell membrane through which the A1 unit passes.
Transcription of the ctxAB operon is regulated by a number of environmental signals, including temperature, pH, osmolarity, and certain amino acids. Several other V. cholerae genes are coregulated in the same manner including the tcp operon, which is concerned with fimbrial synthesis and assembly. Thus the ctx operon and the tcp operon are part of a regulon, the expression of which is controlled by the same environmental signals.
The proteins involved in control of this regulon expression have been identified as ToxRToxS and ToxTToxR is a transmembranous protein with about two-thirds of its amino terminal part exposed to the cytoplasm. ToxR dimers, but not ToxR monomers, will bind to the operator region of ctxAB operon and activate its transcription. ToxS is a periplasmic protein. It is thought that ToxS can respond to environmental signals, change conformation, and somehow influence dimerization of ToxR which activities transcription of the operon.  ToxR and ToxS appear to form a standard two-component regulatory system with ToxS functioning as a sensor protein that phosphorylates and thus converts ToxR to its active DNA binding form. ToxT is  a cytoplasmic protein that is a transcriptional activator of the tcp operon. Expression of ToxT is activated by ToxR, while ToxT, in turn, activates transcription of tcp genes for synthesis of tcp pili.
Thus, the ToxR protein is a regulatory protein which functions as an inducer in a system of positive control. Tox R is thought to interact with ToxS in order to sense some change in the environment and transmit a molecular signal to the chromosome which induces the transcription of genes for attachment (pili formation) and toxin production. It is reasonable to expect that the environmental conditions that exist in the GI tract (i.e., 37o temperature, low pH, high osmolarity, etc.), as opposed to conditions in the extraintestinal (aquatic) environment of the vibrios, are those that are necessary to induce formation of the virulence factors necessary to infect. However, there is conflicting experimental evidence in this regard, which leads to speculation of the ecological function of the toxin during human infection.


Immunity to Cholera

Infection with V. cholerae results in a spectrum of responses ranging from life-threatening secretory diarrhea to mild or unapparent infections of no manifestation except a serologic response. The reasons for these differences are not known. One idea is that individuals differ in the availability of intestinal receptors for cholera vibrios or for their toxin, but this has not been proven. Prior immunologic experience is certainly a major factor. For example, in heavily endemic regions such as Bangladesh, the attack rate is relatively low among adults in comparison with children.
After natural infection by V. cholerae, circulating antibodies can be detected against several cholera antigens including the toxin, somatic (O) antigens, and flagellar (H) antigens. These antibodies are also raised by parenteral injection of antigens as vaccine components. Antibodies directed against Vibrio O antigens are considered "vibriocidal" antibodies because they will lyse V. cholerae cells in the presence of complement and serum components. Vibriocidal antibodies reach a peak 8-10 days after the onset of clinical illness, and then decrease, returning to the baseline 2 - 7 months later. Their presence correlates with resistance to infection, but they may not be the mediators of this protection, and the role of circulating antibodies in natural infection is unclear.
After natural infection, people also develop toxin-neutralizing antibodies butthere is no correlation between antitoxic antibody levels and the incidence of disease in cholera zones.
Since cholera is essentially a topical disease of the small intestine, it would seem that topical defense might be a main determinant of protection against infection by V. cholerae. Recurrent infections of cholera are in fact, rare, and this is probably due to local immune defense mediated by antibodies secreted onto the surfaces of the intestinal mucosa. Moreover, in children who are nursing cholera is less likely to occur, presumably due to protection afforded by secretory antibody in mother's milk.
Secretory IgA, as well as IgG and IgM in serum exudate, can be detected in the intestinal mucosa of immune individuals. Although these antibodies presumably have to function in the absence of complement they still bring about protective immunity. Motility is important in pathogenesis, and antibodies against flagella could immobilize the vibrios. Antibodies against flagella or somatic O antigens could cause clumping and arrested motion of cells. Antitoxic antibodies could react with toxin at the epithelial cell surface and block binding or activity of the the toxin.  Since the process by which the vibrios attach to the intestinal epithelium is highly specific, antibodies against Vibrio fimbriae or other surface components (LPS?) could block attachment.
The observation that natural infection confers effective and long-lasting immunity against cholera has led to efforts to develop a vaccine which will elicit protective immunity. The first attempts at a vaccine in 1960s were directed at whole cell preparations injected parenterally. At best, 90% protection was achieved and this immunity waned rapidly to the baseline within one year. Purified LPS fractions from different biotypes have also been given as vaccines with variable success. The cholera toxin can be converted to toxoid in the presence of formalin and glutaraldehyde. The toxoid is a poor antigen, however, and it elicits a very low level of protection.
At the present time, the manufacture and sale of the only licensed cholera vaccine in the United States has been discontinued. Two recently developed oral vaccines for cholera are licensed and available in other countries (Dukoral®, Biotec AB and Mutacol®, Berna). Both vaccines appear to provide  somewhat better immunity and fewer side-effects than the previously available vaccine. However, neither of these two vaccines is recommended for travelers nor are they available in the United States.  Nor are the vaccines recommended for inhabitants of regions where cholera is entrenched, since their use may render complacency with regard to individual susceptibility to disease. One of the vaccines also advertises protection against enterotoxigenic E. coli (ETEC) which produces a toxin (LT) identical to cholera toxin, and which is an important cause of traveller's diarrhea.
The oral vaccines are made from a live attenuated strains of V. cholerae.The ideal properties of such a "vaccine strain" of the bacterium would be to possess all the pathogenicity factors required for colonization of the small intestine (e.g. motility, fimbriae, neuraminidase, etc.) but not to produce a complete toxin molecule. Ideally it should produce only the B subunit of the toxin which would stimulate formation of antibodies that could neutralize the binding of the native toxin molecule to epithelial cells.
A new vaccine has been developed to combat the Vibrio cholerae Bengal strain that has started spreading in epidemic fashion in the Indian subcontinent and Southeast Asia. The Bengal strain differs from previously isolated epidemic strains in that it is serogroup 0139 rather than 01, and it expresses a distinct polysaccharide capsule. Since previous exposure to 01 Vibrio cholerae does not provide protective immunity against 0139, there is no residual immunity in the indigenous population to the Bengal form of cholera.
The noncellular vaccine is relatively nontoxic and contains little or no LPS and other impurities. The vaccine will be used for active immunization against Vibrio cholerae O139 and other bacterial species expressing similar surface polysaccharides. In addition, human or other antibodies induced by this vaccine could be used to identify Vibrio cholerae Bengal for the diagnosis of the infection and for environmental monitoring of the bacterium.
Cholera References and Links
Baron Medical Microbiology Textbook
Cholera, Vibrio cholerae O1 and O139, and Other Pathogenic Vibrios by Richard A. Finkelstein
World Health Organization
Cholera



END OF CHAPTER 

Pathogenic E. coli

Pathogenic E. coli (page 1) 

(This chapter has 4 pages) 



E. coli O157:H7. Phase contrast image of cells immobilized on an agar-coated slide. William Ghiorse, Department of Microbiology, Cornell University, Ithaca, New York. Licensed for use by ASM Microbe Libraryhttp://www.microbelibrary.org

Escherichia coli
Theodor Escherich first described E. coli in 1885, as Bacterium coli commune,which he isolated from the feces of newborns. It was later renamed Escherichia coli, and for many years the bacterium was simply considered to be a commensal organism of the large intestine. It was not until 1935 that a strain ofE. coli was shown to be the cause of an outbreak of diarrhea among infants.
The GI tract of most warm-blooded animals is colonized by E. coli within  hours or a few days after birth. The bacterium is ingested in foods or water or obtained directly from other individuals handling the infant. The human bowel is usually colonized within 40 hours of birth. E. coli can adhere to the mucus overlying the large intestine. Once established, an E. coli strain may persist for months or years. Resident strains shift over a long period (weeks to months), and more rapidly after enteric infection or antimicrobial chemotherapy that perturbs the normal flora. The basis for these shifts and the ecology of Escherichia coli in the intestine of humans are poorly understood despite the vast amount of information on almost every other aspect of the organism's existence. The entire DNA base sequence of the E. coli genome has been known since 1997.
E. coli is the head of the large bacterial family, Enterobacteriaceae, the enteric bacteria, which are facultatively anaerobic Gram-negative rods that live in the intestinal tracts of animals in health and disease. The Enterobacteriaceae are among the most important bacteria medically. A number of genera within the family are human intestinal pathogens (e.g. SalmonellaShigellaYersinia). Several others are normal colonists of the human gastrointestinal tract (e.g.EscherichiaEnterobacterKlebsiella), but these bacteria, as well, may occasionally be associated with diseases of humans.
Physiologically, E. coli is versatile and well-adapted to its characteristic habitats. It can grow in media with glucose as the sole organic constituent. Wild-type E. coli has no growth factor requirements, and metabolically it can transform glucose into all of the macromolecular components that make up the cell. The bacterium can grow in the presence or absence of O2. Under anaerobic conditions it will grow by means of fermentation, producing characteristic "mixed acids and gas" as end products. However, it can also grow by means of anaerobic respiration, since it is able to utilize NO3, NO2 or fumarate as final electron acceptors for respiratory electron transport processes. In part, this adapts E. coli to its intestinal (anaerobic) and its extraintestinal (aerobic or anaerobic) habitats.
E. coli can respond to environmental signals such as chemicals, pH, temperature, osmolarity, etc., in a number of very remarkable ways considering it is a unicellular organism. For example, it can sense the presence or absence of chemicals and gases in its environment and swim towards or away from them. Or it can stop swimming and grow fimbriae that will specifically attach it to a cell or surface receptor. In response to change in temperature and osmolarity, it can vary the pore diameter of its outer membrane porins to accommodate larger molecules (nutrients) or to exclude inhibitory substances. With its complex mechanisms for regulation of metabolism the bacterium can survey the chemical contents in its environment in advance of synthesizing any enzymes that metabolize these compounds. It does not wastefully produce enzymes for degradation of carbon sources unless they are available, and it does not produce enzymes for synthesis of metabolites if they are available as nutrients in the environment.
E. coli is a consistent inhabitant of the human intestinal tract, and it is thepredominant facultative organism in the human GI tract; however, it makes up a very small proportion of the total bacterial content. The anaerobicBacteroides species in the bowel outnumber E. coli by at least 20:1. however, the regular presence of E. coli in the human intestine and feces has led to tracking the bacterium in nature as an indicator of fecal pollution and water contamination. As such, it is taken to mean that, wherever E. coli is found, there may be fecal contamination by intestinal parasites of humans.

Unstained cells of E. coli viewed by phase microscopy. about 1000X magnification. CDC.

Escherichia coli in the Gastrointestinal Tract
The commensal E. coli strains that inhabit the large intestine of all humans and warm-blooded animals comprise no more than 1% of the total  bacterial biomass. 
The E. coli flora is apparently in constant flux. One study on the distribution of different E. coli strains colonizing the large intestine of women during a one year period (in a hospital setting) showed that 52.1% yielded one serotype, 34.9% yielded two, 4.4% yielded three, and 0.6% yielded four.  The most likely source of new serotypes of E. coli is acquisition by the oral route. 
To study oral acquisition, the carriage rate of E. coli carrying antibiotic-resistance plasmids (R factors) was examined among vegetarians, babies, and nonvegetarians. It was assumed that nonvegetarians might carry more E. coliwith R factors due to their presumed high incidence in animals treated with growth-promoting antimicrobial agents. However, omnivores had no higher an incidence of R-factor-containing E. coli than vegetarians, and babies had more resistant E. coli in their feces than nonvegetarians. No suitable explanation could be offered for these findings. Besides, investigation of the microbial flora of the uninhabited Krakatoa archipelago has shown the presence of antibiotic-resistantE. coli associated with plants. 
The bottom line seems to be that most of us have more than one strain of E. coliin our gut, and intestinal strains tend to displace one another about three or four times a year.

Pathogenesis of E. coli

Over 700 antigenic types (serotypes) of E. coli are recognized based on O, H, and K antigens. At one time serotyping was important in distinguishing the small number of strains that actually cause disease. Thus, the serotype O157:H7 (O refers to somatic antigen; H refers to flagellar antigen) is uniquely responsible for  causing HUS (hemolytic uremic syndrome). Nowadays, particularly for diarrheagenic strains (those that cause diarrhea) pathogenic E. coli are classified based on their unique virulence factors and can only be identified by these traits. Hence, analysis for pathogenic E. coli usually requires that the isolates first be identified as E. coli before testing for virulence markers.

Pathogenic strains of E. coli are responsible for three types of infections in humans: urinary tract infections (UTI)neonatal meningitis, and intestinal diseases (gastroenteritis). The diseases caused (or not caused) by a particular strain of E. coli depend on distribution and expression of an array of virulence determinants, including adhesins, invasins, toxins, and abilities to withstand host defenses. These are summarized in Table 1 and applied to the discussion of pathogenic strains E. coli below.

Table 1. Summary of the Virulence Determinants of Pathogenic E. coli 

Adhesins
CFAI/CFAII
Type 1 fimbriae
P fimbriae
S fimbriae
Intimin (non-fimbrial adhesin)
EPEC adherence factor

Invasins

hemolysin
Shigella-like "invasins" for intracellular invasion and spread 

Motility/chemotaxis

flagella
Toxins
LT toxin
ST toxin
Shiga toxin
cytotoxins
endotoxin (LPS) 

Antiphagocytic surface properties

capsules
K antigens
LPS 

Defense against serum bactericidal reactions

LPS
K antigens 

Defense against immune responses

capsules
K antigens
LPS
antigenic variation 

Genetic attributes

genetic exchange by transduction and conjugation
transmissible plasmids
R factors and drug resistance plasmids
toxin and other virulence plasmids
siderophores and siderophore uptake systems
pathogenicity islands

Urinary Tract Infections

Uropathogenic E. coli (UPEC) cause 90% of the urinary tract infections (UTI) in anatomically-normal, unobstructed urinary tracts. The bacteria colonize from the feces or perineal region and ascend the urinary tract to the bladder. Bladder infections are 14-times more common in females than males by virtue of the shortened urethra. The typical patient with uncomplicated cystitis is a sexually-active female who was first colonized in the intestine with a uropathogenic E. colistrain. The organisms are propelled into the bladder from the periurethral region during sexual intercourse. With the aid of specific adhesins they are able to colonize the bladder.
The adhesin that has been most closely associated with uropathogenic E. coli is the P fimbria (or pyelonephritis-associated pili [PAP]). The letter designation is derived from the ability of P fimbriae to bind specifically to the P blood group antigen which contains a D-galactose-D-galactose residue. The fimbriae bind not only to red cells but to a specific galactose dissaccharide that is found on the surfaces uroepithelial cells in approximately 99% of the population.
The frequency of the distribution of this host cell receptor plays a role in susceptibility and explains why certain individuals have repeated UTI caused byE. coli. Uncomplicated E. coli UTI virtually never occurs in individuals lacking the receptors.
Uropathogenic strains of E. coli possess other determinants of virulence in addition to P fimbriae. E. coli with P fimbriae also possess the gene for Type 1 fimbriae, and there is evidence that P fimbriae are derived from Type 1 fimbriae by insertion of a new fimbrial tip protein to replace the mannose-binding domain of Type 1 fimbriae. In any case, Type 1 fimbriae could provide a supplementary mechanism of adherence or play a role in aggregating the bacteria to a specific manosyl-glycoprotein that occurs in urine.
Uropathogenic strains of E. coli usually produce siderophores that probably play an essential role in iron acquisition for the bacteria during or after colonization. They also produce hemolysins which are cytotoxic due to formation of transmembranous pores in host cell membranes. One strategy for obtaining iron and other nutrients for bacterial growth may involve the lysis of host cells to release these substances. The activity of hemolysins is not limited to red cells since the alpha-hemolysins of E. coli also lyse lymphocytes, and the beta-hemolysins inhibit phagocytosis and chemotaxis of neutrophils.
Another factor thought to be involved in the pathogenicity of the uropathogenic strains of E. coli is their resistance to the complement-dependent bactericidal effect of serum. The presence of K antigens is associated with upper urinary tract infections, and antibody to the K antigen has been shown to afford some degree of protection in experimental infections. The K antigens of E. coli are "capsular" antigens that may be composed of proteinaceous organelles associated with colonization (e.g., CFA antigens), or made of polysaccharides. Regardless of their chemistry, these capsules may be able to promote bacterial virulence by decreasing the ability of antibodies and/or complement to bind to the bacterial surface, and the ability of phagocytes to recognize and engulf the bacterial cells. The best studied K antigen, K-1, is composed of a polymer of N-acetyl neuraminic acid (sialic acid), which besides being antiphagocytic, has the additional property of being an antigenic disguise. 
Neonatal Meningitis

Neonatal meningitis affects 1/2,000-4,000 infants. Eighty percent of E. colistrains involved synthesize K-1 capsular antigens (K-1 is only present 20-40% of the time in intestinal isolates).
E. coli strains invade the blood stream of infants from the nasopharynx or GI tract and are carried to the meninges.
The K-1 antigen is considered the major determinant of virulence among strains of E. coli that cause neonatal meningitis. K-1 is a homopolymer of sialic acid. It inhibits phagocytosis, complement, and responses from the host's immunological mechanisms. K-1 may not be the only determinant of virulence, however, as siderophore production and endotoxin are also likely to be involved.
Epidemiologic studies have shown that pregnancy is associated with increased rates of colonization by K-1 strains and that these strains become involved in the subsequent cases of meningitis in the newborn. Probably, the infant GI tract is the portal of entry into the bloodstream. Fortunately, although colonization is fairly common, invasion and the catastrophic sequelae are rare.
Neonatal meningitis requires antibiotic therapy that usually includes ampicillin and a third-generation cephalosporin. 

Lysis of a dividing pair of E. coli cells in the presence of a beta-lactam antibiotic. Some beta lactam antibiotics, such as  ampicillin and cephalosporin, are effective in the treatment of meningitis caused by strains of E. coli (above). The beta lactam antibiotics prevent cell wall synthesis and assembly in the bacterium. When the bacterium grows in the presence of the antibiotic, the cell wall becomes progressively weaker and weaker, so the the organism eventually ruptures or "lyses", pouring out its cytoplasmic contents as shown here.

Intestinal Diseases Caused by E. coli

As a pathogen, E. coli is best known for its ability to cause intestinal diseases. Five classes (virotypes) of E. coli that cause diarrheal diseases are now recognized: enterotoxigenic E. coli (ETEC), enteroinvasive E. coli (EIEC), enterohemorrhagic E. coli (EHEC), enteropathogenic E. coli (EPEC), and enteroaggregative E. coli (EAEC). Each class falls within a serological subgroup and manifests distinct features in pathogenesis. A summary of the characteristics of diarrheagenic strains of E. coli is given in Table 2 at the end of this article.

Enterotoxigenic E. coli (ETEC)
ETEC is an important cause of diarrhea in infants and travelers in underdeveloped countries or regions of poor sanitation. In the U.S., it has been implicated in sporadic waterborne outbreaks, as well as due to the consumption of soft cheeses, Mexican-style foods and raw vegetables. The diseases vary from minor discomfort to a severe cholera-like syndrome. ETEC are acquired by ingestion of contaminated food and water, and adults in endemic areas evidently develop immunity. The disease requires colonization and elaboration of one or more enterotoxins. Both traits are plasmid-encoded.

ETEC may produce a heat-labile enterotoxin (LT) that is similar in molecular size, sequence, antigenicity, and function to the cholera toxin (Ctx). It is an 86kDa protein composed of an enzymatically active (A) subunit surrounded by 5 identical binding (B) subunits. It binds to the same identical ganglioside receptors that are recognized by the cholera toxin (i.e., GM1), and its enzymatic activity is identical to that of the cholera toxin.

ETEC may also produce a heat stable toxin (ST) that is of low molecular size and resistant to boiling for 30 minutes. There are several variants of ST, of which ST1a or STp is found in E. coli isolated from both humans and animals, while ST1b or STh is predominant in human isolates only. The ST enterotoxins are peptides of molecular weight about 4,000 daltons. Their small size explains why they are not inactivated by heat. ST causes an increase in cyclic GMP in host cell cytoplasm leading to the same effects as an increase in cAMP. ST1a is known to act by binding to a guanylate cyclase that is located on the apical membranes of host cells, thereby activating the enzyme. This leads to secretion of fluid and electrolytes resulting in diarrhea.

The infective dose of ETEC for adults has been estimated to be at least 108 cells; but the young, the elderly and the infirm may be susceptible to lower numbers.
ETEC adhesins are fimbriae which are species-specific. For example, the K-88 fimbrial Ag is found on strains from piglets; K-99 Ag is found on strains from calves and lambs; CFA I, and CFA II, are found on strains from humans. These fimbrial adhesins adhere to specific receptors on enterocytes of the proximal small intestine.
Symptoms ETEC infections include diarrhea without fever. The bacteria colonize the GI tract by means of a fimbrial adhesin, e.g. CFA I and CFA II, and are noninvasive, but produce either the LT or ST toxin. <>


Enteroinvasive E. coli (EIEC)
EIEC closely resemble Shigella in their pathogenic mechanisms and the kind of clinical illness they produce. EIEC penetrate and multiply within epithelial cells of the colon causing widespread cell destruction. The clinical syndrome is identical to Shigella dysentery and includes a dysentery-like diarrhea with fever. EIEC apparently lack fimbrial adhesins but do possess a specific adhesin that, as inShigella, is thought to be an outer membrane protein. Also, like Shigella, EIEC are invasive organisms. They do not produce LT or ST toxin.

There are no known animal reservoirs of EIEC. Hence the primary source for EIEC appears to be infected humans. Although the infective dose of Shigella is low (in the range of 10 to few hundred cells), volunteer feeding studies showed that at least 106 EIEC organisms are required to cause illness in healthy adults. Unlike typical E. coli, EIEC are non-motile, do not decarboxylate lysine and do not ferment lactose. Pathogenicity of EIEC is primarily due to its ability to invade and destroy colonic tissue. The invasion phenotype, encoded by a high molecular weight plasmid, can be detected by PCR and probes for specific for invasion genes.


Enteropathogenic E. coli (EPEC)
EPEC induce a profuse watery, sometimes bloody, diarrhea. They are a leading cause of infantile diarrhea in developing countries. Outbreaks have been linked to the consumption of contaminated drinking water as well as some meat products.  Pathogenesis of EPEC involves a plasmid-encoded protein referred to as EPEC adherence factor (EAF) that enables localized adherence of bacteria to intestinal cells and a non fimbrial adhesin designated intimin, which is an outer membrane protein that mediates the final stages of adherence. They do not produce ST or LT toxins.
Adherence of EPEC strains to the intestinal mucosa is a very complicated process and produces dramatic effects in the ultrastructure of the cells resulting in rearrangements of actin in the vicinity of adherent bacteria. The phenomenon is sometimes called "attachment and effacing" of cells. EPEC strains are said to be "moderately-invasive",  meaning they are not as invasive as Shigella, and unlike ETEC or EAEC, they cause an inflammatory response. The diarrhea and other symptoms of EPEC infections probably are caused by bacterial invasion of host cells and interference with normal cellular signal transduction, rather than by production of toxins.

Through volunteer feeding studies the infectious dose of EPEC in healthy adults has been estimated to be 106 organisms.

Some types of EPEC are referred to as diffusely adherent E. coli (DAEC), based on specific patterns of adherence. They are an important cause of traveler's diarrhea in Mexico and in North Africa.
Enteroaggregative E. coli (EAEC)
The distinguishing feature of EAEC strains is their ability to attach to tissue culture cells in an aggregative manner. These strains are associated with persistent diarrhea in young children. They resemble ETEC strains in that the bacteria adhere to the intestinal mucosa and cause non-bloody diarrhea without invading or causing inflammation. This suggests that the organisms produce an enterotoxin of some sort. Recently, a distinctive heat-labile plasmid-encoded toxin has been isolated from these strains, called the EAST (EnteroAggregative STtoxin. They also produce a hemolysin related to the hemolysin produced by E. coli strains involved in urinary tract infections. The role of the toxin and the hemolysin in virulence has not been proven. The significance of EAEC strains in human disease is controversial.

 
Enterohemorrhagic E. coli (EHEC)
EHEC are recognized as the primary cause of hemorrhagic colitis (HC) or bloody diarrhea, which can progress to the potentially fatal hemolytic uremic syndrome (HUS). EHEC are characterized by the production of verotoxin orShiga toxins (Stx). Although Stx1 and Stx2 are most often implicated in human illness, several variants of Stx2 exist.

There are many serotypes of Stx-producing E. coli , but only those that have been clinically associated with HC are designated as EHEC. Of these, O157:H7 is the prototypic EHEC and most often implicated in illness worldwide. The infectious dose for O157:H7 is estimated to be 10 - 100 cells; but no information is available for other EHEC serotypes. EHEC infections are mostly food or water borne and have implicated undercooked ground beef, raw milk, cold sandwiches, water, unpasteurized apple juice and vegetables
EHEC are considered to be "moderately invasive". Nothing is known about the colonization antigens of EHEC but fimbriae are presumed to be involved. The bacteria do not invade mucosal cells as readily as Shigella, but EHEC strains produce a toxin that is virtually identical to the Shiga toxin. The toxin plays a role in the intense inflammatory response produced by EHEC strains and may explain the ability of EHEC strains to cause HUS. The toxin is phage encoded and its production is enhanced by iron deficiency.

E. coli O157:H7 Transmission EM. American Society for Microbiology

Table 2. Diarrheagenic E. coli: virulence determinants and characteristics of disease

ETEC
fimbrial adhesins e.g. CFA I, CFAII, K88. K99
non invasive
produce LT and/or ST toxin
watery diarrhea in infants and travelers; no inflammation, no fever 

EIEC

nonfimbrial adhesins, possibly outer membrane protein
invasive (penetrate and multiply within epithelial cells)
does not produce shiga toxin
dysentery-like diarrhea (mucous, blood), severe inflammation, fever

EPEC
non fimbrial adhesin (intimin)
EPEC adherence factor (EAF) enables localized adherence of bacteria to intestinal cells
moderately invasive (not as invasive as Shigella or EIEC)
does not produce LT or ST; some reports of shiga-like toxin
usually infantile diarrhea; watery diarrhea with blood, some inflammation, no fever; symptoms probably result mainly from invasion rather than toxigenesis

EAEC
adhesins not characterized
non invasive
produce ST-like toxin (EAST) and a hemolysin
persistent diarrhea in young children without inflammation or fever

EHEC
adhesins not characterized, probably fimbriae
moderately invasive
does not produce LT or ST but does produce shiga toxin
pediatric diarrhea, copious bloody discharge (hemorrhagic colitis), intense inflammatory response, may be complicated by hemolytic uremia 



END OF CHAPTER 


Bacillus anthracis and Anthrax


Bacillus anthracis 

Kingdom: Bacteria
Phylum: Firmicutes
Class: Bacilli
Order: Bacillales
Family: Bacillaceae
Genus: Bacillus
Species: anthracis

The anthrax bacillus, Bacillus anthracis, was the first bacterium shown to be the cause of a disease. In 1877, Robert Koch grew the organism in pure culture, demonstrated its ability to form endospores, and produced experimental anthrax by injecting it into animals.
Figure 1. Robert Koch's original photomicrographs of Bacillus anthracis, the agent of anthrax. Compare the cell morphology and spore position  with the Gram stain below (Figure 2). This is Bacillus anthracis. Beware of phony and mislabeled images of B. anthracis on the internet, including some that are posted by otherwise credible websites. Look for large cells with square ends and centrally-located ellipsoid spores when identifying Bacillus anthracis.
Bacillus anthracis is very large, Gram-positive, sporeforming rod, 1 - 1.2µm in width x 3 - 5µm in length. The bacterium can be cultivated in ordinary nutrient medium under aerobic or anaerobic conditions. Genotypically and phenotypically it is very similar to Bacillus cereus, which is found in soil habitats around the world, and to Bacillus thuringiensis, the pathogen for larvae of Lepidoptera. The three species have the same cellular size and morphology and form oval spores located centrally in a nonswollen sporangium.

Figure 2.  Bacillus anthracis. Gram stain. 1500X. The cells have characteristic squared ends. The endospores are ellipsoidal shaped and located centrally in the sporangium. The spores are highly refractile to light and resistant to staining.
Bacillus thuringiensis is distinguished from B. cereus or B. anthracis by its pathogenicity for Lepidopteran insects (moths and caterpillars) and by production of an intracellular parasporal crystal in association with spore formation. The bacteria and protein crystals are sold as "Bt" insecticide, which is used for the biological control of certain garden and crop pests.

Figure 3. Bacillus thuringiensis. Phase Photomicrograph of vegetative cells, intracellular spores (light) and parasporal crystals (dark). 1000X.
Bacillus cereus is a normal inhabitant of the soil, but it can be regularly isolated from foods such as grains and spices.  B. cereus causes two types of food-borne intoxications (as opposed to infections). One type is characterized by nausea and vomiting and abdominal cramps and has an incubation period of 1 to 6 hours. It resembles Staphylococcus aureus food poisoning in its symptoms and incubation period. This is the "short-incubation" or emetic form of the disease. The second type is manifested primarily by abdominal cramps and diarrhea with an incubation period of 8 to 16 hours. Diarrhea may be a small volume or profuse and watery. This type is referred to as the "long-incubation" or diarrheal form of the disease, and it resembles food poisoning caused by Clostridium perfringens. In either type, the illness usually lasts less than 24 hours after onset.

The short-incubation form is caused by a preformed, heat-stable emetic toxin, ETE. The mechanism and site of action of this toxin are unknown, although the small molecule forms ion channels and holes in membranes. The long-incubation form of illness is mediated by the heat-labile diarrheagenic enterotoxin Nheand/or hemolytic enterotoxin HBL, which cause intestinal fluid secretion, probably by several mechanisms, including pore formation and activation of adenylate cyclase enzymes.

Figure 4. Bacillus cereus. Gram stain. 450X. Bacilli are large bacteria, so that they are readily observed with the microscope's "high dry objective" ........but you can't detect anything about their spores. This could be a Lactobacillus.

Cultivation
Several nonselective and selective media for the detection and isolation ofBacillus anthracis have been described, as well as a rapid screening test for the bacterium based on the morphology of microcolonies. Table 1 provides the differential characteristics that are used to distinguish Bacillus anthracis from most strains of Bacillus cereus and Bacillus thuringiensis but not necessarily from other saprophytic species of Bacillus. Otherwise, it is not the intent of this article to provide information on the growth of the bacterium in the laboratory.
Table 1. Differential Characteristics of B. anthracis B. cereus and B. thuringiensis
CharacteristicB. anthracisB. cereus and 
B. thuringiensis 
growth requirement for thiamin
+
-
hemolysis on sheep blood agar
-
+
glutamyl-polypeptide capsule
+
-
lysis by gamma phage
+
-
motility
-
+
growth on chloral hydrate agar
-
+
string-of-pearls test
+
-

The following figures (5, 6, and 7) from the CDC are reliable images ofBacillus anthracis grown as described in the figure legends.

Figure 5. Colonies of Bacillus cereus on the left; colonies of Bacillus anthracis on the right. B. cereus colonies are larger, more mucoid, and this strain exhibits a slight zone of hemolysis on blood agar.
 

Figure 6. Lysis of Bacillus anthracis by the lytic phage gamma. The plaque (clear area) in the region of confluent growth is where the gamma phage was applied. The plaque results from the phage's ability to lyse the bacterial cells. Since the gamma phage is specific for B. anthracis, and will not lyse B. thuringiensis or B. cereus, we know that this is Bacillus anthracis. The colony type of is similar to Figure 5.
 

Figure 7. Mucoid colonies of Bacillus anthracis. This culture was probably incubated at an increased CO2 tension (5% CO2) which greatly enhances production of the poly-D-glutamyl capsule and accounts for the mucoid colony type.

Anthrax
Anthrax is primarily a disease of domesticated and wild animals, particularly herbivorous animals, such as cattle, sheep, horses, mules and goats. Humans become infected incidentally when brought into contact with diseased animals, which includes their flesh, bones, hides, hair and excrement.
The natural history of Bacillus anthracis is obscure. Although the spores have been found naturally in soil samples from around the world, the organisms cannot be regularly cultivated from soils where there is an absence of endemic anthrax. In the United States there are recognized areas of infection in South Dakota, Nebraska, Arkansas, Texas, Louisiana, Mississippi, California and small areas that exist in other states. Even in endemic areas, anthrax occurs irregularly, often with many years between occurrences.
In the United States, the incidence of naturally-acquired anthrax is extremely rare (1-2 cases of cutaneous disease per year). Worldwide, the incidence is unknown, although B. anthracis is present in most of the world. Unreliable reporting makes it difficult to estimate the true incidence of human anthrax worldwide. However, in fall 2001, 22 cases of anthrax (11 inhalation, 11 cutaneous) were identified in the United States following intentional contamination of the mail.

The most common form of the disease in humans is cutaneous anthrax, which is usually acquired via injured skin or mucous membranes. A minor scratch or abrasion, usually on an exposed area of the face or neck or arms, is inoculated by spores from the soil or a contaminated animal or carcass. The spores germinate, vegetative cells multiply, and a characteristic gelatinous edemadevelops at the site. This develops into papule within 12-36 hours after infection. The papule changes rapidly to a vesicle, then a pustule (malignant pustule), and finally into a necrotic ulcer from which infection may disseminate, giving rise to septicemia. Lymphatic swelling also occurs within seven days. In severe cases, where the blood stream is eventually invaded, the disease is frequently fatal.
Another form of the disease, inhalation anthrax (woolsorters' disease), results most commonly from inhalation of spore-containing dust where animal hair or hides are being handled. The disease begins abruptly with high fever and chest pain. It progresses rapidly to a systemic hemorrhagic pathology and is often fatal if treatment cannot stop the invasive aspect of the infection.
Gastrointestinal anthrax is analogous to cutaneous anthrax but occurs on the intestinal mucosa. As in cutaneous anthrax, the organisms probably invade the mucosa through a preexisting lesion. The bacteria spread from the mucosal lesion to the lymphatic system. Intestinal anthrax results from the ingestion of poorly cooked meat from infected animals. Gastrointestinal anthrax is rare but may occur as explosive outbreaks associated with ingestion of infected animals. Intestinal anthrax has an extremely high mortality rate.
Meningitis due to B. anthracis is a very rare complication that may result from a primary infection elsewhere.
Pathogenicity of Bacillus anthracis
Bacillus anthracis clearly owes its pathogenicity to two major determinants of virulence: the formation of a poly-D-glutamyl capsule, which mediates the invasive stage of the infection, and the production of the multicomponentanthrax toxin which mediates the toxigenic stage.
Poly-D-glutamyl capsule
Bacillus anthracis forms a single antigenic type of capsule consisting of a poly-D-glutamate polypeptide. All virulent strains of B. anthracis form this capsule. Production of capsular material is associated with the formation of a characteristic mucoid or "smooth" colony type. "Smooth" (S) to "rough" (R) colonial variants occur, which is correlated with ability to produce the capsule. R variants are relatively avirulent. Capsule production depends on a 60 megadalton plasmid, pX02; its transfer to nonencapsulated B. anthracis via transduction produces the encapsulated phenotype.

Figure 8. Two microscopic techniques to demonstrate the presence of the poly-D-glutamyl capsule of Bacillus anthracis. Left. India ink capsule outline 1000X. Right a fluorescent-labeled antibody is reacted specifically with the capsular material which renders the capsule fluorescent - FA stain 1000X.
The poly-D-glutamyl capsule is itself nontoxic, but functions to protect the organism against complement and the bactericidal components of serum and phagocytes, and against phagocytic engulfment and destruction. The capsule plays its most important role during the establishment of the infection, and a less significant role in the terminal phases of the disease, which are mediated by the anthrax toxin.
The poly-D-glutamyl capsule is formed in vivo or in the laboratory when the bacterium is grown on serum plates in a 5% CO2 atmosphere. The capsular material can be detected by the McFadyean reaction which involves staining with polychrome methylene blue. Blue rods in a background of purple/pink-stained capsular material is a positive test (Figure 9).  Neither B. cereus nor B. thuringiensis synthesizes this capsular polymer, so the detection of capsular material can be used to distinguish B. anthracis from its closest relatives.

Figure 9. McFadyean's reaction showing short chains of  Bacillus anthraciscells lying among amorphous, disintegrated capsular material. White blood cells can also be seen.
Anthrax Toxin
The toxigenic properties of Bacillus anthracis were not recognized until 1954. Prior to that time, because of the tremendous number of anthrax bacilli observed in the blood of animals dying of the disease (109 bacteria/ml), it was assumed that death was due to blockage of the capillaries, popularly known as the "log-jam" theory. But experimentally it was shown that only about 3 x 106cells/ml are necessary to cause death of the animal. Furthermore, the cell-free plasma of animals dying of anthrax infection contained a toxin which causes symptoms of anthrax when injected into normal guinea pigs. These observations left little doubt that a diffusible exotoxin plays a major role in the pathogenesis of anthrax.
One component of the anthrax toxin has a lethal mode of the action that is not entirely understood at this time. Death is apparently due to oxygen depletion, secondary shock, increased vascular permeability, respiratory failure and cardiac failure. Death from anthrax in humans or animals frequently occurs suddenly and unexpectedly. The level of the lethal toxin in the circulation increases rapidly quite late in the disease, and it closely parallels the concentration of organisms in the blood.
Production of the anthrax toxin is mediated by a temperature-sensitive plasmid, pX01, of 110 megadaltons. The toxin consists of three distinct antigenic components. Each component of the toxin is a thermolabile protein with a mw of approximately 80kDa.
Factor I is the edema factor (EF) which is necessary for the edema producing activity of the toxin. EF is known to be an inherent adenylate cyclase, similar to the Bordetella pertussis adenylate cyclase toxin.
Factor II is the protective antigen (PA), because it induces protective antitoxic antibodies in guinea pigs. PA is the binding (B) domain of the anthrax toxin which has two active (A) domains, EF (above) and LF (below).
Factor III is known as the lethal factor (LF) because it is essential for thelethal effects of the anthrax toxin. Apart from their antigenicity, each of the three factors exhibits no significant biological activity in an animal. However, combinations of two or three of the toxin components yield the following results in experimental animals.
PA+LF combine to produce lethal activity
EF+PA produce edema
EF+LF is inactive
PA+LF+EF produces edema and necrosis and is lethal
These experiments suggest that the anthrax toxin has the familiar A-B enzymatic-binding structure of bacterial exotoxins with PA acting as the B fragment and either EF or LF acting as the active A fragment.
EF+PA has been shown to elevate cyclic AMP to extraordinary levels in susceptible cells. Changes in intracellular cAMP are known to affect changes in membrane permeability and may account for edema. In macrophages and neutrophils an additional effect is the depletion of ATP reserves which are needed for the engulfment process. Hence, one effect of the toxin may be to impair the activity of regional phagocytes during the infectious process.
The effects of EF and LF on neutrophils have been studied in some detail. Phagocytosis by opsonized or heat-killed Bacillus anthracis cells is not inhibited by either EF or LF, but a combination of EF + LF inhibits engulfment of the bacteria and the oxidative burst in the pmns. The two toxin components also increased levels of cAMP in the neutrophils. These studies suggest that the two active components of the toxin, EF + LF, together increase host susceptibility to infection by suppressing neutrophil function and impairing host resistance.
LF+PA have combined lethal activity as stated above. The lethal factor is a Zn++dependent protease that induces cytokine production in macrophages and lymphocytes, and its mechanism of action is slowly becoming understood. The  crystal structure of lethal factor is known to to be a  member of the mitogen-activated protein kinase (MAPKK) family of enzymes that disrupts cellular signaling. Furthermore, the identity of the human receptor for anthrax PA, named anthrax toxin receptor, has been demonstrated to be a type I membrane protein that binds directly to PA.
In summary, the virulence of Bacillus anthracis is attributable to three bacterial components; 1. Capsular material composed of poly-D-glutamate polypeptide; 2. EF component of exotoxin; 3. LF component of exotoxin. Both the capsule and the anthrax toxin may play a role in the early stages of infection, through their direct effects on phagocytes. Virulent anthrax bacilli multiply at the site of the lesion. Phagocytes migrate to the area but the encapsulated organisms can resist phagocytic engulfment, or if engulfed, can resist killing and digestion. A short range effect of the toxin is its further impairment of phagocytic activity and its lethal effect on leukocytes, including phagocytes, at the site. After the organisms and their toxin enter the circulation, the systemic pathology, which may be lethal, will result.
Bacillus anthracis coordinates the expression of its virulence factors in response to a specific environmental signal. Anthrax toxin proteins and the antiphagocytic capsule are produced in response to growth in increased atmospheric CO2. This CO2 signal is thought to be of physiological significance for a pathogen which invades mammalian host tissues.

Immunity to Anthrax
Considerable variation in genetic susceptibility to anthrax exists among animal species. Resistant animals fall into two groups: (1) resistant to establishment of anthrax but sensitive to the toxin and (2) resistant to the toxin but susceptible to establishment of disease. This is illustrated in the table below. Neither the source of the inoculum (spores or vegetative cells or a mixture) nor the route of inoculation (subcutaneous, gastrointestinal, or inhalational) is stated. The infectious dose of anthrax is expected to vary widely based on these parameters, as well.
Table 2. The infectious dose of B. anthracis  and the lethal dose of toxin varies greatly within animal species. The data do not specify the route of infection or whether spores or vegetative cells were used in the inoculum.
Animal model Infectious doseToxic dose causing deathBacteria per ml blood at time death
Mouse5 cells1000 units/kg107
Monkey3000 cells2500 unit/kg107
Rat106 cells15 units/kg105
Animals surviving naturally-acquired anthrax are immune to reinfection. Second attacks are extremely rare. Permanent immunity to anthrax seems to require antibodies to both the toxin and the capsular polypeptide, but the relative importance of the two kinds of antibodies appears to vary widely in different animals.
Vaccines composed of killed bacilli and/or capsular antigens produce no significant immunity. A nonencapsulated toxigenic strain has been used effectively in livestock. The Sterne Strain of Bacillus anthracis produces sublethal amounts of the toxin that induces formation of protective antibody.
The anthrax vaccine for humans, which is used in the U.S., is a preparation of the protective antigen recovered from the culture filtrate of an avirulent, nonencapsulated strain of Bacillus anthracis that produces PA during active growth. Anthrax immunization consists of three subcutaneous injections given two weeks apart followed by three additional subcutaneous injections given at 6, 12, and 18 months. Annual booster injections of the vaccine are required to maintain a protective level of immunity.
The vaccine is indicated for individuals who come in contact in the workplace with imported animal hides, furs, bone, meat, wool, animal hair (especially goat hair) and bristles; and for individuals engaged in diagnostic or investigational activities which may bring them into contact with anthrax spores. Otherwise, it has been indicated for the military during the current era of biological warfare.
The vaccine should only be administered to healthy individuals from 18 to 65 years of age, since investigations to date have been conducted exclusively in that population. It is not known whether the anthrax vaccine can cause fetal harm, and pregnant women should not be vaccinated.
A new type of passive vaccine to anthrax is currently on the horizon. This was recently announced by R.G. Crystal and colleagues from the Medical College of Cornell University, in the February, 2005 issue of the journal, Molecular Therapy. They demonstrated that mice vaccinated with a human adenovirus expressing a single-chain antibody directed against protective antigen (PA) became immune to anthrax within 24 hours of vaccination. This is much quicker than is possible with existing anthrax vaccines, which are a relatively crude preparation of PA.
Currently available anthrax vaccines have limited use in a bioterrorism attack because they are active vaccines in which multiple doses are required over several months to elicit protective immunity against anthrax. Passive vaccines, on the other hand, introduce fully formed antibodies directly to the body and immunity is achieved much sooner.
In mice receiving the adenovirus-based anti-PA vaccine, PA-specific serum antibodies were detectable within 24 hours. These antibodies had neutralizing activity that protected mice from an intravenous lethal toxin challenge administered 1-14 days post vaccination.
Crystal, et al envision a possible scenario wherein both the passive and active vaccine might be given. Passive vaccines lose their effectiveness fairly rapidly over time, whereas active vaccines do not. The passive vaccine could provide protection that would last a couple of weeks, but that would provide a safety margin for development of more active, long-term immunity stimulated by the active vaccine.
Passive immunotherapy with such adenovirus-based vectors expressing anti-PA antibody, either alone or in combination with antibiotics, may be a rapid, convenient, and highly effective strategy to protect against or treat anthrax in a bioterrorism attack.
Also, in cases of anthrax, coadministration of the passive vaccine with antibiotics may maximize the utility of antibiotic therapy. Coadministration would counter the effects of lethal toxin, and likely prolong the time frame for effective antibiotic treatment and/or reduce the amount of antibiotic therapy required.
Treatment of Anthrax
Antibiotics should be given to unvaccinated individuals exposed to inhalation anthrax. Penicillin, tetracyclines and fluoroquinolones are effective if administered before the onset of lymphatic spread or septicemia, estimated to be about 24 hours. Antibiotic treatment is also known to lessen the severity of disease in individuals who acquire anthrax through the skin. Inhalation anthrax was formerly thought to be nearly 100% fatal despite antibiotic treatment, particularly if treatment is started after symptoms appear. A recent Army study resulted in successful treatment of monkeys with antibiotic therapy after being exposed to anthrax spores. The antibiotic therapy was begun one day after exposure.

Anthrax and Biological Warfare
The inhalation of anthrax spores can lead to infection and disease. The possibility of creating aerosols containing anthrax spores has made B. anthracisa chosen weapon of bioterrorism. Several powers may have the ability to load spores of B. anthracis into weapons. Domestic terrorists may develop means to distribute spores via mass attacks or small-scale attacks at a local level.
As an agent of biological warfare it is expected that a cloud of anthrax spores would be released at a strategic location to be inhaled by the individuals under attack. Spores of B. anthracis can be produced and stored in a dry form and remain viable for decades in storage or after release.
There is no evidence of person-to-person transmission of anthrax. Quarantine of affected individuals is not recommended. Anthrax spores may survive in the soil, water and on surfaces for many years. Spores can only be destroyed by steam sterilization or burning. Chemical disinfection of buildings is problematic. The U.S. Navy Manual on Operational Medicine and Fleet Support, entitled Biological Warfare Defense Information Sheet states "Disinfection of contaminated articles may be accomplished using a 0.05% hypochlorite solution (1 tbs. bleach per gallon of water). Spore destruction requires steam sterilization."
Anthrax spores are killed by boiling (100oC or 212oF) for 30 minutes (the actual reported time is considerably less). If boiling as a means of disinfection, the spores must be in liquid suspension to ensure killing, and in a sealed container to avoid aerosolization or vaporization of droplet nuclei containing spores.
An infection of local animal populations such as sheep and cattle could follow a biological attack with spores. Infected animals could then transmit the disease to humans through the cutaneous, intestinal or inhalation route by spores from a contaminated animal, carcass or hide.
At the time of the war with Iraq a segment of the U.S. military population was vaccinated against anthrax. An immune military population is required to resist an attack with anthrax spores.
The anthrax vaccine consists of a series of six doses with yearly boosters. The first vaccine of the series must be given at least four weeks before exposure to the disease. This vaccine protects against anthrax that is acquired through the skin and it is believed that it would also be effective against inhaled spores in a biowarfare situation. Of course, an immune military and civil population would be needed to respond to a domestic bioterrorist attack with anthrax spores. Presumably passive immunity (see the passive vaccine on the previous page) could be employed to afford immediate protection during the development of active immunity by vaccination.



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